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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:26:50 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Mur_ligase_C.html
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#====================================
# Aligned_structures: 3
#   1: 1fgs.pdb
#   2: 1gg4a.pdb
#   3: 4uaga.pdb
#
# Length:        164
# Identity:        5/164 (  3.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     38/164 ( 23.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           70/164 ( 42.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1fgs.pdb                1  -WPARLEKISDT--PLIVIDG-AHNPDGINGLITALKQL-FSQPITVIAG----------   45
1gg4a.pdb               1  -VPGRLFPIQLAENQLLLDDSYNANVGS-TAAVQVLAE---PGYRVLVVGDAELGAESEA   55
4uaga.pdb               1  GLPHRFEVVLEHNGVRWINDSKATNVGSTEAALN---GLHVDGTLHLLLGG---------   48
                             P Rle i      l   Ds a Nvgs  aa          g   l  G          

1fgs.pdb               46  ------YAAMADRLTAAF----STVYLVPVPGTPR------------GRLKDSWQEALAA   83
1gg4a.pdb              56  -----CHVQVGEAAKAAGI---DRVLSVGK-----QSHAISTASGV-GEHFADKTALITR  101
4uaga.pdb              49  DGKSADFSPLARYLN----GDNVRLYCFGR-----DGAQLAALRPEVAEQTETMEQAMRL   99
                                     a  l         rvy vg                  ge       a   

1fgs.pdb               84  SLND---VPDQPIVITG----------SLYL-ASAVRQTLLG--  111
1gg4a.pdb             102  LKLLIAEQQVITILVKGS----------RSAA-EEVVRALQ---  131
4uaga.pdb             100  LAPRV--QPGDMVLLSPACASLDQFKNFEQR-GNEFARLAKELG  140
                           l      qp   il  g                 ev r l    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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