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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:26:50 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/MAAL.html
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#====================================
# Aligned_structures: 2
#   1: 1kd0a.pdb
#   2: 1kkoa.pdb
#
# Length:        411
# Identity:      219/411 ( 53.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    219/411 ( 53.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           25/411 (  6.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1kd0a.pdb               1  KIVDVLCTPGLTGFYFDDQRAIKKGAGHDGFTYTGSTVTEGFTQVRQKGESISVLLVLED   60
1kkoa.pdb               1  KIKQALFTAGYSSFYFDDQQAIKNGAGHDGFIYTGDPVTPGFTSVRQAGECVSVQLILEN   60
                           KI   L T G   FYFDDQ AIK GAGHDGF YTG  VT GFT VRQ GE  SV L LE 

1kd0a.pdb              61  GQVAHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPA-EEFD-KTV  118
1kkoa.pdb              61  GAVAVGDCAAVQYSGAGGRDPLFLAEHFIPFLNDHIKPLLEGRDVDAFLPNARFFDKLRI  120
                           G VA GDCAAVQYSGAGGRDPLFLA  FIP     I P L GR    F P    FD    

1kd0a.pdb             119  NGNRLHTAIRYGITQAILDAVAKTRKVT-AEVIRDEYNP-GAEINAVPVFAQSGD--DRY  174
1kkoa.pdb             121  DGNLLHTAVRYGLSQALLDATALASGRLKTEVVCDEWQ-LPCVPEAIPLFGQS-GDDRYI  178
                            GN LHTA RYG  QA LDA A        EV  DE         A P F QS       

1kd0a.pdb             175  DNVDKIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDV  234
1kkoa.pdb             179  -AVDKILKGVDVLPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDV  237
                             VDKI K  DVLPHALINNVEEKLG KGEKL EYV WL DRI  LR    Y P  HIDV

1kd0a.pdb             235  YGTIGAAFDVDIKAADYIQTLAEAAKPFHLRIEGP-DVEDRQKQ-EARDLRAELDGRGVD  292
1kkoa.pdb             238  YGTIGLIFDDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRLTAITKELTRLGSG  297
                           YGTIG  FD     A YI  L   A    L IEGP D      Q        EL   G  

1kd0a.pdb             293  AELVADEWCNTVEDVKFFTDNKAGHVQIKTPDLGGVNNIADAI-YCKANGGAYCGGTCNE  351
1kkoa.pdb             298  VKIVADEWCNTYQDIVDFTDAGSCHVQIKTPDLGGIHNIVDAVLYCNKHGEAYQGGTCNE  357
                              VADEWCNT  D   FTD    HVQIKTPDLGG  NI DA  YC   G AY GGTCNE

1kd0a.pdb             352  TNRSAEVTTNIGACGARQ----VLAKPGGVDEG--IVKNENRVLALVGRRK  396
1kkoa.pdb             358  TEISARTCVHVAL-----AARPRLIKPGGFDEGLNIVFNENRTIALLQT--  401
                           T  SA                  L KPGG DEG  IV NENR  AL     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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