################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Sat Jul 23 07:42:38 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/LuxS.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: 1inna.pdb # 2: 1j6wa.pdb # 3: 1j6xa.pdb # 4: 1j98a.pdb # # Length: 166 # Identity: 30/166 ( 18.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 58/166 ( 34.9%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 33/166 ( 19.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1inna.pdb 1 -NVESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLA 59 1j6wa.pdb 1 -LLDSFKVDHTK-NAPAVRIAKT-LTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFA 57 1j6xa.pdb 1 KNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDH-D-PSLHSLEHLVA 58 1j98a.pdb 1 --VESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLA 58 veSF lDHtk APyVR a gd i k D RF qPN iHtLEHL A 1inna.pdb 60 GYR-DHLE-----GVVDVSPGCRTG---YAVIGEPDEQGV-KAFEAALKDTAGHDQ---P 106 1j6wa.pdb 58 GFR-DHLN-GDSIEIIDISPGCRT-GF-YSLIGTPNEQKVSEAWLAS-QDVLGV-QDQAS 111 1j6xa.pdb 59 EIIRNHAN-----YVVDWSPGCQT-GFYLTVLNHDNYTEILEVLEKT-QDVLKA-K---E 107 1j98a.pdb 59 FTIRSHAEKYDHFDIIDISPMGQT-GYYLVVSGETTSAEIVDLLEDTMKEAVEI-T---E 113 H D SPgc T v g e d 1inna.pdb 107 IPGVSELECGNYRDHDLAAARQHARDVLDQGLKVQETILL------ 146 1j6wa.pdb 112 IPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNED-LSLDN- 155 1j6xa.pdb 108 VPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWS-----EVG--- 145 1j98a.pdb 114 IPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEEL-----LKVF-G 153 iP ne qCG H Le A ar l #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################