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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:57:41 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/LMWPc.html
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#====================================
# Aligned_structures: 3
#   1: 1d1qa.pdb
#   2: 1dg9a.pdb
#   3: 5pnt.pdb
#
# Length:        162
# Identity:       57/162 ( 35.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    134/162 ( 82.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            9/162 (  5.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d1qa.pdb               1  IE-KPKISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHR   59
1dg9a.pdb               1  -AEQVTKSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNW-VIDSGAVSDWNVGRSPDPR   58
5pnt.pdb                1  -AEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENW-RVDSAATSGYEIGNPPDYR   58
                            a q tkSVlFvcLGNiCRSPiAEAvFrklVtdqNis nw  iDS atS y vG sPD R

1d1qa.pdb              60  TVSICKQHGVKINHKGKQIKTKHFDEYDYIIGMDESNINNLKKIQ--PEGSKAKVCLFGD  117
1dg9a.pdb              59  AVSCLRNHGINTAHKARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVKNCRAKIELLGS  118
5pnt.pdb               59  GQSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGS  118
                            vSc k HGi   HkarQitkedF tfDYIlcMDESNlrdLnrks  vk ckAKieLlGs

1d1qa.pdb             118  WNTNDGTVQTIIEDPWYGDIQDFEYNFKQITYFSKQFLKKEL  159
1dg9a.pdb             119  YD-P--QKQLIIEDPYYGNDADFETVYQQCVRCCRAFLEKVR  157
5pnt.pdb              119  YD-PQ--KQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH  157
                           yd p   kQlIIEDPyYGnd DFEtvyqQcvrccraFLeK  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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