################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 20:56:07 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/LIF_OSM.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1evsa.pdb # 2: 1lki.pdb # # Length: 201 # Identity: 33/201 ( 16.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 33/201 ( 16.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 67/201 ( 33.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1evsa.pdb 1 GSCSKEYR------------VLLGQLQKQTDLMQD--TSRLLDPYIRIQGLD--VPKLRE 44 1lki.pdb 1 --------NATCAIRHPCHGNLMNQIKNQLAQLNGSAN-ALFISYYTAQG--EPFPNNVE 49 L Q Q L Y QG P E 1evsa.pdb 45 H-CRERPGAFPSEETLRGLGRRGFLQTLNATLGCVLHRLADLEQRLPKAQDLERSGL--- 100 1lki.pdb 50 KLCAPNMTDFPSF--HGNGTEKTKLVELYRMVAYLSASLTNITRDQ-----------KVL 96 C FPS L L L 1evsa.pdb 101 ---NIEDLEKLQMARPNILGLRNNIYCMAQ-LLDN--------------ASDAFQRKLEG 142 1lki.pdb 97 NPTAVSLQVKLNATIDVMRGLLSNVLCRLCNKY--RVGHVDVPPVPDHSDKEAFQRKKLG 154 KL GL N C AFQRK G 1evsa.pdb 143 CRFLHGYHRFMHSVGRVFSKW 163 1lki.pdb 155 CQLLGTYKQVISVVVQAF--- 172 C L Y V F #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################