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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:40:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Invasin.html
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#====================================
# Aligned_structures: 3
#   1: 1cwva1.pdb
#   2: 1cwva2.pdb
#   3: 1cwva3.pdb
#
# Length:        107
# Identity:        9/107 (  8.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     43/107 ( 40.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           20/107 ( 18.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cwva1.pdb              1  ----TIAADKSTLAAVPTSIIADGLMASTITLELKDTYGDPQAGAN-VAFDTTL-G-NM-   52
1cwva2.pdb              1  -ADPIPDAGRSSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNGVPVSI-   58
1cwva3.pdb              1  L--------TLTAAVIGDGAPANGKTAITVEFTVADFEGKPLAGQE-VVITTNNGA-LPN   50
                                     st av    i AdG masT  f   D  G p aG   v fttn       

1cwva1.pdb             53  -GVITDHNDGTYSAPLTSTTLGVATVTVKVDGAAFSVPSVTVNFT--   96
1cwva2.pdb             59  -SPITEQ-PDSYTATVVGNSVGDVTITPQVDTLILSTLQKKISLFPV  103
1cwva3.pdb             51  KITEKTDANGVARIALTNTTDGVTVVTAEVEGQRQ---SVDTHFVKG   94
                              it    g y a lt tt Gv tvT  Vdg      sv   f   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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