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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:44:37 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/INTERFERON_A_B_D.html
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#====================================
# Aligned_structures: 2
#   1: 1au1a.pdb
#   2: 1itf.pdb
#
# Length:        187
# Identity:       50/187 ( 26.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     50/187 ( 26.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           43/187 ( 23.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1au1a.pdb               1  MSYNLLGFLQ-------RSSNFQCQKLLWQLNG-RLEYCLKDRMNFD-IPEEIKQLQQFQ   51
1itf.pdb                1  ----------CDLPQTHSLGSRRTLMLLAQMRKISLFSCLKDRHDFGFPQEEFGNQ--FQ   48
                                                     LL Q     L  CLKDR  F    EE      FQ

1au1a.pdb              52  KEDAALTIYEMLQNIFAIFRQDSSST----GWNETIVENLLANVYHQINHLKTVLEEK--  105
1itf.pdb               49  KAETIPVLHEMIQQIFNLFSTK----DSSAAWDETLLDKFYTELYQQLNDLEACVIQGVG  104
                           K        EM Q IF  F            W ET         Y Q N L         

1au1a.pdb             106  LEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINRLTGYLR  165
1itf.pdb              105  VTETPLM--KEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNLQE---  159
                                    K  S L    Y  RI  YLK K YS CAW  VR EI R F     L     

1au1a.pdb             166  N------  166
1itf.pdb              160  -SLRSKE  165
                                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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