################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 20:38:07 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/HPPK.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1cbka.pdb # 2: 1eqoa.pdb # # Length: 161 # Identity: 88/161 ( 54.7%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 88/161 ( 54.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 4/161 ( 2.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1cbka.pdb 1 MITAYIALGSNLNTPVEQLHAALKAISQLSNTHLVTTSSFYKSKPLGPQDQPDYVNAVAK 60 1eqoa.pdb 1 -TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVA 59 AYIA GSNL P EQ AALKA H T SSFY PLGPQDQPDY NA 1cbka.pdb 61 IETELSPLKLLDELQRIENEQGRVRL-RRWGERTLDLDILLYGNEIIQNERLTIPHYDMH 119 1eqoa.pdb 60 LETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMK 119 ET L P LL QRIE QGRVR RWG RTLDLDI L GNE I ERLT PHYDM 1cbka.pdb 120 NREFVIVPLFEIASDLVLPNSQIITELVKQFADHKMIKLNP 160 1eqoa.pdb 120 NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW-- 158 NR F PLFEIA LV P A K K #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################