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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:19:04 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Glyco_hydro_67.html
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#====================================
# Aligned_structures: 2
#   1: 1gqia.pdb
#   2: 1k9da.pdb
#
# Length:        734
# Identity:      277/734 ( 37.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    277/734 ( 37.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           90/734 ( 12.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gqia.pdb               1  EDG-YDMWLRYQPIADQTLLKTYQKQIRHLHVAGDSPTINAAAAELQRGLSGLLNKPIVA   59
1k9da.pdb               1  ---YEPCWLRYERKD-QYSRL----RFEEIVAKRTSPIFQAAVEELQKGLRSMMEIEPQV   52
                                  WLRY     Q                  SP   AA  ELQ GL          

1gqia.pdb              60  RDEKL-K-DYSLVIGTPDNSPLIASLNLGERLQALG-AEGYLLEQTRIN---KRHVVIVA  113
1k9da.pdb              53  VQEV-NETANSIWLGTLEDEE-----FERPLEGTLVHPEGYVIRSD---VDDGPFRIYII  103
                             E       S   GT                  L   EGY                   

1gqia.pdb             114  ANSDVGVLYGSFHLLRLIQTQHALEKLSLSSAPRLQHRVVNHWDNLNRVVERGYAGLSLW  173
1k9da.pdb             104  GKTDAGVLYGVFHFLRLLQMGENIAQLSIIEQPKNRLRMINHWDNMDGSIERGYAGRSIF  163
                              D GVLYG FH LRL Q       LS    P    R  NHWDN     ERGYAG S  

1gqia.pdb             174  DWGSLPNY--L-APRYTDYARINASLGINGTVINNVNA----DPRVLSDQFLQKIAALAD  226
1k9da.pdb             164  F---VDDQFVKQNQRIKDYARLLASVGINAISINNVNVHKTET-KLITDHFLPDVAEVAD  219
                                         R  DYAR  AS GIN   INNVN           D FL   A  AD

1gqia.pdb             227  AFRPYGIKMYLSINFNSPRAFGDVDTADPLDPRVQQWWKTRAQKIYSYIPDFGGFLVKAD  286
1k9da.pdb             220  IFRTYGIKTFLSINYASPIEIGGLPTADPLDPEVRWWWKETAKRIYQYIPDFGGFVVKA-  278
                            FR YGIK  LSIN  SP   G   TADPLDP V  WWK  A  IY YIPDFGGF VKA 

1gqia.pdb             287  SEGQPGPQGYGRDHAEGANMLAAALKPFGGVVFWRAFVYHP-DI------EDRFRGAYDE  339
1k9da.pdb             279  ----PGPFTYGRDHAEGANMLAEALAPFGGLVIWRCFVYNCQQ-DWRDRTTDRAKAAYDH  333
                               PGP  YGRDHAEGANMLA AL PFGG V WR FVY            DR   AYD 

1gqia.pdb             340  FMPLDGKFADNVILQIKNGPIDFQPREPFSALFAGMSRTNMMMEFQITQEYFGFATHLAY  399
1k9da.pdb             334  FKPLDGQFRENVILQIKNGPMDFQVREPVSPLFGAMPKTNQMMEVQITQEYTGQQKHLCF  393
                           F PLDG F  NVILQIKNGP DFQ REP S LF  M  TN MME QITQEY G   HL  

1gqia.pdb             400  QGPLFEESLKTETHARGEGSTIGNILEGKVFKTRHTGMAGVINPGTDRNWTGHPFVQSSW  459
1k9da.pdb             394  LIPQWKEVLDFDTYAKGKGSEVKKVIDGSLFDYRYSGIAGVSNIGSDPNWTGHTLAQANL  453
                             P   E L   T A G GS       G  F  R  G AGV N G D NWTGH   Q   

1gqia.pdb             460  YAFGRMAWDHQISAATAADEWLRMTFSNQPAFIEPVKQMMLVSREAGVNYRSPLGLTHLY  519
1k9da.pdb             454  YGFGRLAWNPDLSAEEIANEWVVQTFGDDSQVVETISWMLLSSWRIYENYTSPLGVGWMV  513
                           Y FGR AW    SA   A EW   TF       E    M L S     NY SPLG     

1gqia.pdb             520  SQGDHYGPAPWTD-DLPRADWTAVY-YHRASKTGIGFNRT-KTGSNALAQYPEPIAKAWG  576
1k9da.pdb             514  NPGHHYGPNVDGYEYSHWG------TYHYADRDGIGVDRTVATGTGYTAQYFPENAAMYE  567
                             G HYGP                  YH A   GIG  RT  TG    AQY    A    

1gqia.pdb             577  DLNSVPEDLILWFHHLSWDHRMQSGRNLWQELVHKYYQGVEQVRAMQRTWDQQEAYVDAA  636
1k9da.pdb             568  SLDTCPDELLLFFHHVPYTHRLHSGETVIQHIYNTHFEGVEQAKQLRKRWEQLKGKIDEK  627
                            L   P  L L FHH    HR  SG    Q        GVEQ       W Q     D  

1gqia.pdb             637  RFAQVKALLQVQEREAVRWRNSCVLYFQSVAGRPIPANYEQPEHDLEYYKMLARTT-YVP  695
1k9da.pdb             628  RYHDVLERLTIQVEHAKEWRDVINTYFYRKSGIDDQY-G-----------------RKIY  669
                           R   V   L  Q   A  WR     YF    G                            

1gqia.pdb             696  EPWHPASSSRVLK-  708
1k9da.pdb             670  -------------R  670
                                         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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