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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:17:46 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Glyco_hydro_48.html
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#====================================
# Aligned_structures: 2
#   1: 1fce.pdb
#   2: 1l1ya.pdb
#
# Length:        655
# Identity:      377/655 ( 57.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    377/655 ( 57.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           39/655 (  6.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1fce.pdb                1  A-------SSPANKVYQDRFESMYSKIKDPANGYFS-EQGIPYHSIETLMVEAPDYGHVT   52
1l1ya.pdb               1  -GPTKAPTKDGT--SYKDLFLELYGKIKDPKNGYFSPDEGIPYHSIETLIVEAPDYGHVT   57
                                          Y D F   Y KIKDP NGYFS   GIPYHSIETL VEAPDYGHVT

1fce.pdb               53  TSEAMSYYMWLEAMHGRFSGDFTGFDKSWSVTEQYLIPTEKDQPNTSMSRYDANKPATYA  112
1l1ya.pdb              58  TSEAFSYYVWLEAMYGNLTGNWSGVETAWKVMEDWIIPDSTEQP--GMSSYNPNSPATYA  115
                           TSEA SYY WLEAM G   G   G    W V E   IP    QP   MS Y  N PATYA

1fce.pdb              113  PEFQDPSKYPSPLDTS-QPVGRDPINSQLTSAYGTSMLYGMHWILDVDNWYGFGARADGT  171
1l1ya.pdb             116  DEYEDPSYYPSELKFDTVRVGSDPVHNDLVSAY-GPNMYLMHWLMDVDNWYGFG-TGT--  171
                            E  DPS YPS L      VG DP    L SAY     Y MHW  DVDNWYGFG      

1fce.pdb              172  SKPSYINTFQRGEQESTWETIPQPCWDEHKFGGQYGFLDLFTKDTGTPAKQFKYTNAPDA  231
1l1ya.pdb             172  -RATFINTFQRGEQESTWETIPHPSIEEFKYGGPNGFLDLFTKDRS-YAKQWRYTNAPDA  229
                                INTFQRGEQESTWETIP P   E K GG  GFLDLFTKD    AKQ  YTNAPDA

1fce.pdb              232  DARAVQATYWADQWAKEQGKS--VSTSVGKATKMGDYLRYSFFDKYFRKIGQ-PSQAGTG  288
1l1ya.pdb             230  EGRAIQAVYWANKWAKEQGKGSAVASVVSKAAKMGDFLRNDMFDKYFMKIGAQDKTPATG  289
                             RA QA YWA  WAKEQGK   V   V KA KMGD LR   FDKYF KIG       TG

1fce.pdb              289  YDAAHYLLSWYYAWGGGIDSTWSWIIGSSHNHFGYQNPFAAWVLSTDANFKPKSSNGASD  348
1l1ya.pdb             290  YDSAHYLMAWYTAWGGGIGASWAWKIGCSHAHFGYQNPFQGWVSATQSDFAPKSSNGKRD  349
                           YD AHYL  WY AWGGGI   W W IG SH HFGYQNPF  WV  T   F PKSSNG  D

1fce.pdb              349  WAKSLDRQLEFYQWLQSAEGAIAGGATNSWNGRYEAVPSGTSTFYGMGYVENPVYADPGS  408
1l1ya.pdb             350  WTTSYKRQLEFYQWLQSAEGGIAGGATNSWNGRYEKYPAGTSTFYGMAYVPHPVYADPGS  409
                           W  S  RQLEFYQWLQSAEG IAGGATNSWNGRYE  P GTSTFYGM YV  PVYADPGS

1fce.pdb              409  NTWFGMQVWSMQRVAELYYKTGDARAKKLLDKWAKWINGEIKFNADGTFQIPSTIDWEGQ  468
1l1ya.pdb             410  NQWFGFQAWSMQRVMEYYLETGDSSVKNLIKKWVDWVMSEIKLYDDGTFAIPSDLEWSGQ  469
                           N WFG Q WSMQRV E Y  TGD   K L  KW  W   EIK   DGTF IPS   W GQ

1fce.pdb              469  PDTWNPTQGYTGNANLHVKVVNYGTDLGCASSLANTLTYYAAKS------GDETSRQNAQ  522
1l1ya.pdb             470  PDTWTG--TYTGNPNLHVRVTSYGTDLGVAGSLANALATYAAATERWEGKLDTKARDMAA  527
                           PDTW     YTGN NLHV V  YGTDLG A SLAN L  YAA         D   R  A 

1fce.pdb              523  KLLDAMWNNYSD--SKGISTVEQRGDYHRFLDQEVFVPAGWTGKMPNGDVIKSGVKFIDI  580
1l1ya.pdb             528  ELVNRAWYNFYCSEGKGVVTEEARADYKRFFEQEVYVPAGWSGTMPNGDKIQPGIKFIDI  587
                            L    W N      KG  T E R DY RF  QEV VPAGW G MPNGD I  G KFIDI

1fce.pdb              581  RSKYKQDPEWQTMVAALQAGQVPTQRLHRFWAQSEFAVANGVYAILFPD------  629
1l1ya.pdb             588  RTKYRQDPYYDIVYQAYLRGEAPVLNYHRFWHEVDLAVAMGVLATYFPDMTYKVP  642
                           R KY QDP       A   G  P    HRFW     AVA GV A  FPD      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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