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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:20:43 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Glyco_hydro_47.html
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#====================================
# Aligned_structures: 2
#   1: 1dl2a.pdb
#   2: 1fo3a.pdb
#
# Length:        528
# Identity:      185/528 ( 35.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    185/528 ( 35.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           91/528 ( 17.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dl2a.pdb               1  GA------GEMRDRIESMFLESWRDYSKHGWGYDVYGPIEHTSHNMPRGNQPLGWIIVDS   54
1fo3a.pdb               1  --QGPVHLNYRQKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFSEWF----GLGLTLIDA   54
                                             FL  W  Y K  WG D   P              LG    D 

1dl2a.pdb              55  VDTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLSAYHL  114
1fo3a.pdb              55  LDTMWILG---------LRKEFEEARKWVSKKLHFEKDVDVNLFESTIRILGGLLSAYHL  105
                            DT                 E      W    L F  D  VN FE TIR LGGLLSAYHL

1dl2a.pdb             115  SDVLEVGNKTVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQAVKNHADGGASSTAE  174
1fo3a.pdb             106  SG------DSLFLRKAEDFGNRLMPAFR-TPSKIPYSDVNIGTGVAHPPR---SDSTVAE  155
                           S           L KA D G RL  AF  T   IPYS  N   G A         S  AE

1dl2a.pdb             175  FTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDLLNT--YDGLVPIYTFPDTGKFGA  232
1fo3a.pdb             156  VTSIQLEFRELSRLTGDKKFQEAVEKVTQHIHGLS-----GKKDGLVPMFINTHSGLFTH  210
                            T  Q EF  L  LTG     E VE V                DGLVP       G F  

1dl2a.pdb             233  -STIRFGSRGDSFYEYLLKQYLLT-H-ETLYYDLYRKSMEGMKKHLLAQSKPSSLWYIGE  289
1fo3a.pdb             211  LGVFTLGARADSYYEYLLKQWIQGGKQETQLLEDYVEAIEGVRTHLLRHSEPSKLTFVGE  270
                                 G R DS YEYLLKQ       ET     Y    EG   HLL  S PS L   GE

1dl2a.pdb             290  REQGLHGQLSPKMDHLVCFMGGLLASGSTEGLSIHEARRRPFFSKSDWDLAKGITDTCYQ  349
1fo3a.pdb             271  LAH---GRFSAKMDHLVCFLPGTLALGVYH-----------GLPASHMELAQELMETCYQ  316
                                 G  S KMDHLVCF  G LA G                  S   LA     TCYQ

1dl2a.pdb             350  MYKQSSSGLAPEIVVFNDG-NIKDGWWRSS--VGDFFVKPLDRHNLQRPETVESIMFMYH  406
1fo3a.pdb             317  MNRQMETGLSPEIVHFNLYPQ---------PGRRDVEVKPADRHNLLRPETVESLFYLYR  367
                           M  Q   GL PEIV FN                 D  VKP DRHNL RPETVES    Y 

1dl2a.pdb             407  LSHDHKYREWGAEIATSFFENTCVDCNDPKLRRFTSLSDCIT-LPTKKSNNMESFWLAET  465
1fo3a.pdb             368  VTGDRKYQDWGWEILQSFSRFTRVP-----SGGYSSINNVQDPQKPEPRDKMESFFLGET  422
                              D KY  WG EI  SF   T V           S               MESF L ET

1dl2a.pdb             466  LKYLYILFLDEF---DLTKVVFNTEAHPFPVLDEEILKSQSLTTGWSL  510
1fo3a.pdb             423  LKYLFLLFSDDPNLLSLDAYVFNTEAHPLPIWT---------------  455
                           LKYL  LF D      L   VFNTEAHP P                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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