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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 07:25:08 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Glyco_hydro_18_D1.html
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#====================================
# Aligned_structures: 4
#   1: 1d2ka.pdb
#   2: 1e15a.pdb
#   3: 1e9la.pdb
#   4: 1edqa.pdb
#
# Length:        478
# Identity:       33/478 (  6.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     86/478 ( 18.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          206/478 ( 43.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d2ka.pdb               1  G------------------------GFRSVVYFVNW--AIY-G-------RGHNPQDL--   24
1e15a.pdb               1  T------------------------RKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITP   36
1e9la.pdb               1  --------------------------YQLMCYYTSW--AKD-R---PIE-GSFKPGNI--   25
1edqa.pdb               1  -TDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEW--GVY-G-------RNFTVDKI--   47
                                                          Y   w                f    i  

1d2ka.pdb              25  -KADQFTHILYAFANIRP--------------------------SGEVYLS----DTWAD   53
1e15a.pdb              37  AKAKQLTHINFSFLDINS--------------------------NLECAWDPATNDA-KA   69
1e9la.pdb              26  -DPCLCTHLIYAFAGMQ---------------------------NNEITYT----HE-QD   52
1edqa.pdb              48  -PAQNLTHLLYGFIPICGGNGINDSLKEIEGSFQALQRSCQGREDFKVSIH----DPFAA  102
                             a   TH  y F  i                              e        d    

1d2ka.pdb              54  TDKHYPGDKWD-EPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWT------YS-PNFKTP  105
1e15a.pdb              70  R------------------DVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNA  111
1e9la.pdb              53  L------------------RDYEALNGLKDKNTELKTLLAIGGWK------FGPAPFSAM   88
1edqa.pdb             103  LQKAQKGVT--AWDD-PYKGNFGQLMALKQAHPDLKILPSIGGWT------LS-DPFFF-  151
                                                   l  LK  n  Lk l sIGGW        s   f   

1d2ka.pdb             106  ASTEEGRKKFADTSLKLMKDLG-FDGIDIDWEYPE---------DEKQANDFVLLLKACR  155
1e15a.pdb             112  VKTPASRAKFAQSCVRIMKDYG-FDGVDIDWEYPQ---------A-AEVDGFIAALQEIR  160
1e9la.pdb              89  VSTPQNRQIFIQSVIRFLRQYN-FDGLNLDWQYPGSR-----GSPPKDKHLFSVLVKEMR  142
1edqa.pdb             152  MGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELR  211
                             t   R  F  s          FDG diDWeyP                 f  l ke R

1d2ka.pdb             156  EALDAYSAKHPNGK---KFLLTIA-SPAGPQNYNK-L--KLAEMDKYLDFWNLMAYDFSG  208
1e15a.pdb             161  TLLNQQTITDG--RQALPYQLTIA-GAGGAFFLSR-YYSKLAQIVAPLDYINLMTYDLAG  216
1e9la.pdb             143  KAFEEESVEKD--I---PRLLLTSTGAGIIDVIKSGY--KIPELSQSLDYIQVMTYDLHD  195
1edqa.pdb             212  AMLDQLSVETG--R---KYELTSA-ISAGKDKIDK-V--AYNVAQNSMDHIFLMSYDFYG  262
                             l   s             Lt a    g          k       lD i lM YD  g

1d2ka.pdb             209  SWD-KVSGHMSNVFPSTTKP-----------------E---------STP-FSSDKAVKD  240
1e15a.pdb             217  PWE-KVTNHQAALFGDAAGPTFYNALREANLGWSWEE-LTRAFPSPF---SLTVDAAVQQ  271
1e9la.pdb             196  PKD-GYTGENSPLYKSPYDI-----------------GKS-------A--DLNVDSIISY  228
1edqa.pdb             263  AFDLKNLGHQTALNAPAWKP-----------------D---------T--AYTTVNGVNA  294
                             d k  gh   l      p                                  d  v  

1d2ka.pdb             241  YIKA-GVPANKIVLGMPLDTVKIAGKKAEYITKNGMGGGMWWESSSDK-T-------GNE  291
1e15a.pdb             272  HLMMEGVPSAKIVMGVPFDDAESFKYKAKYIKQQQLGGVMFWHLGQDN-R-------N--  321
1e9la.pdb             229  WKDH-GAASEKLIVGFPA-NVRSFKLKAQWLKDNNLGGAVVWPLDMDDFSGSFCHQR--H  284
1edqa.pdb             295  LLAQ-GVKPGKIVVGTAM-DARSVQAKGKYVLDKQLGGLFSWEIDADN------------  340
                                Gv   Kiv G p     s   Ka y     lGG   W    D             

1d2ka.pdb             292  -SLVGTVVNGLG-----------------GTGKLEQRE-NELSYPESVYDNLKNGMPS  330
1e15a.pdb             322  GDLLAALDRYFNAADYDDSQLDMGTGLRYT----GVGPG-------------------  356
1e9la.pdb             285  FPLTSTLKGDLN-----------------I-----HSA-S------------------  301
1edqa.pdb             341  GDILNSMNASLG-----------------N----SAGV-Q------------------  358
                             l       l                                               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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