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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:44:48 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/GEL.html
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#====================================
# Aligned_structures: 5
#   1: 1d0na1.pdb
#   2: 1d0na2.pdb
#   3: 1svr.pdb
#   4: 1yagg.pdb
#   5: 2vil.pdb
#
# Length:        172
# Identity:        6/172 (  3.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     12/172 (  7.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           85/172 ( 49.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d0na1.pdb              1  EDAAN-------------------RKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSED   41
1d0na2.pdb              1  -----R----------LKDKKMD-AHPPRLFACSNKIGRFVIEEVP--GEFMQEDLATDD   42
1svr.pdb                1  ------------------------EYKPRLLHISG-DKNAKVAEVP--L-A-TSSLNSGD   31
1yagg.pdb               1  ------MVVE----HPEFLKAGKE-PGLQIWRVEK----FDLVPVP--TNL-YGDFFTGD   42
2vil.pdb                1  ----------VELSKKVTGKLDKTTPGIQIWRIEN----MEMVPVP--TKS-YGNFYEGD   43
                                                                       Vp             D

1d0na1.pdb             42  CFILDHGK-------DGKIFVWKGKQANMEERKAALKTASDFISKM--DYPKQTQVSV--   90
1d0na2.pdb             43  VMLLDTW---------DQVFVWVGKDSQDEEKTEALTSAKRYIDTDPAHRDRRTPITV--   91
1svr.pdb               32  CFLLDAG---------LTIYQFNGSKSSPQEKNKAAEVARAIDA----ERKGLPKVEVFC   78
1yagg.pdb              43  AYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDD----YLNGRAVQHR--   96
2vil.pdb               44  CYVLLSTRKT-GSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDE----YLGSVAVQHR--   96
                              l                 w G      E   A                         

1d0na1.pdb             91  LPEGGETPLFRQFFK-NWRDP-------DQ-TEG--LGLAYL----------  121
1d0na2.pdb             92  VKQGFEPPSFVGWFL-GWDDSYWSVDPLDRALAE--------LAA-------  127
1svr.pdb               79  ETDSDIPAEFWKLLGG------------------------------------   94
1yagg.pdb              97  EVQGFESATFLGYFK-SGLK--------------YKKGGVA----SGF----  125
2vil.pdb               97  EVQGHESETFRAYFK-QGLI--------------YKQGGVA-------SGMK  126
                              g e   F   f                                      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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