################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 19:55:31 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Fe_hyd_lg_C.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1feha.pdb # 2: 1hfel.pdb # # Length: 412 # Identity: 164/412 ( 39.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 164/412 ( 39.8%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 39/412 ( 9.5%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1feha.pdb 1 KDK----TEY-VDERS-----------KSLTVDRTKCLLCGRCVNACGKNTETYAMKFLN 44 1hfel.pdb 1 ---SRTVMERIEYEMHTPDPKADPDKLHFVQIDEAKCIGCDTCSQYC---P-TAAIFG-E 52 E E D KC C C C T A 1feha.pdb 45 KNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALS-EKSHMDRVKNALNAPEKHVIVAM 103 1hfel.pdb 53 M-GEPH----SIPH--IEACINCGQCLTHCPENAIYEAQSWVPEVEKKLKDGKVKCIAMP 105 G C CGQC CP A S V L I 1feha.pdb 104 APSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRIEN 163 1hfel.pdb 106 APAVRYALGDAFGMPVGSVTTGKMLAALQKLGFAHCWDTEFTADVTIWEEGSEFVERLTK 165 AP VR G F M G TGK AL LGF D F AD TI EE E V R 1feha.pdb 164 NG---PFPMFTSCCPGWVRQAENYYPELLNNLSSAKSPQQIFGTASKTYYPSISGLDPKN 220 1hfel.pdb 166 -KSDMPLPQFTSCCPGWQKYAETYYPELLPHFSTCKSPIGMNGALAKTYGAERMKYDPKQ 224 P P FTSCCPGW AE YYPELL S KSP G KTY DPK 1feha.pdb 221 VFTVTVMPCTSKKFEADRPQMEKDGLRDIDAVITTRELAKMIKDAKIPFAKLEDSEADPA 280 1hfel.pdb 225 VYTVSIMPCIAKKYEGLRPELKSSGMRDIDATLTTRELAYMIKKAGIDFAKLPDGKRDSL 284 V TV MPC KK E RP G RDIDA TTRELA MIK A I FAKL D D 1feha.pdb 281 MGEYSGAGAIFGATGGVMEAALRSAKDFAENAELEDIEYKQVRGLNGIKEAEVEINNNKY 340 1hfel.pdb 285 MGESTGGATIFGVTGGVMEAALRFAYEAVTGKKPDSWDFKAVRGLDGIKEATVNVGGTDV 344 MGE G IFG TGGVMEAALR A K VRGL GIKEA V 1feha.pdb 341 NVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPK--- 389 1hfel.pdb 345 KVAVVHGAKRFKQVCDDVKAGKSPYHFIEYMACPGGCVCGGGQPVMPGVLEA 396 VAV GA YHFIE MAC GGCV GGGQP #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################