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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:53:18 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Fe-ADH.html
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#====================================
# Aligned_structures: 2
#   1: 1jq5a.pdb
#   2: 1kq3a.pdb
#
# Length:        370
# Identity:      175/370 ( 47.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    175/370 ( 47.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           10/370 (  2.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1jq5a.pdb               1  AAERVFISPAKYVQGKNVITKIANYLEGIGNKTVVIADEIVWKIAGHTIVNELKK-GNIA   59
1kq3a.pdb               1  HMITTTIFPGRYVQGAGAINILEEELSRFGERAFVVIDDFVDKNV-L-GENFFSSFTKVR   58
                                 I P  YVQG   I      L   G    V  D  V K       N         

1jq5a.pdb              60  AEEVVFSGEASRNEVERIANIARKAE-AAIVIGVGGGKTLDTAKAVADELDAYIVIVPTA  118
1kq3a.pdb              59  VNKQIFGGECSDEEIERLSGLV--EEETDVVVGIGGGKTLDTAKAVAYKLKKPVVIVPTI  116
                                F GE S  E ER        E    V G GGGKTLDTAKAVA  L    VIVPT 

1jq5a.pdb             119  ASTDAPTSALSVIYSDDGVFESYRFYKKNPDLVLVDTKIIANAPPRLLASGIADALATWV  178
1kq3a.pdb             117  ASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVLVDTEIVAKAPARFLVAGMGDALATWF  176
                           ASTDAP SALSVIY   G F  Y F   NPD VLVDT I A AP R L  G  DALATW 

1jq5a.pdb             179  EARSVIKSGGKTMAGGIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTPALEAVVEAN  238
1kq3a.pdb             177  EAESCKQKYAPNMTGRLGSMTAYALARLCYETLLEYGVLAKRSVEEKSVTPALEKIVEAN  236
                           EA S        M G      A A A  C  TL  YG LA  SV  K VTPALE  VEAN

1jq5a.pdb             239  TLLSGLGFESGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALEEHSQQEIERY  298
1kq3a.pdb             237  TLLSGLGFESGGLAAAHAIHNGLTVLEN-THKYLHGEKVAIGVLASLFLTDKPRKMIEEV  295
                           TLLSGLGFESGGLAAAHAIHNG T LE   H   HGEKVA G L  L L       IE  

1jq5a.pdb             299  IELYLCLDLPVTLEDIKLKDASREDILKVAKAATAEGETIHNA-FNVTADDVADAIFAAD  357
1kq3a.pdb             296  YSFCEEVGLPTTLAEIGLDGVSDEDLMKVAEKACDKNETIHNEPQPVTSKDVFFALKAAD  355
                                   LP TL  I L   S ED  KVA  A    ETIHN    VT  DV  A  AAD

1jq5a.pdb             358  QYAKAYKEK-  366
1kq3a.pdb             356  RYGRMRKN-L  364
                            Y    K   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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