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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 06:23:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/FAD_binding_4.html
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#====================================
# Aligned_structures: 4
#   1: 1diia.pdb
#   2: 1f0xa.pdb
#   3: 1i19a.pdb
#   4: 1vaoa.pdb
#
# Length:        347
# Identity:        4/347 (  1.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     24/347 (  6.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          177/347 ( 51.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1diia.pdb               1  ----AVLPKGVTQGEFNKAVQKFRA--------LLGDDN-VLVESDQL----VP----YN   39
1f0xa.pdb               1  ---------------NKAFLNELAR--------LVGSSH-LLTDPAKT----AR----YR   28
1i19a.pdb               1  -------------------------VAPLPTPPNFPNDIALFQQAY--------------   21
1vaoa.pdb               1  EFRPLTLPPKLSLSDFNEFIQDIIR--------IVGSEN-VEVI----SVDGSYMKPTHT   47
                                                              g                        

1diia.pdb              40  KI-MMPVENAA-HAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAPVQ-   96
1f0xa.pdb              29  KGFRSG-----QGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLT-EGSTPNGN   82
1i19a.pdb              22  QNWSKEI----MLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMHGWT-PLTVE-KG   75
1vaoa.pdb              48  HDPHHVMDQDY-FLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRV-  105
                                         a a v p     v             i               p   

1diia.pdb              97  -----RGQVILDLK-KMNKIIKIDPEM---CYALVEPGVTFGQMYDYIQENNL--PVM-L  144
1f0xa.pdb              83  DYDR--DVVIISTL-RLDKLHV-L-GKG--EQVLAYPGTTLYSLEKALKPLGR----EPH  131
1i19a.pdb              76  AN--VEKVILADTMTHLNGITV-NTGG-PVATVTAGAGASIEAIVTELQKHDL----GWA  127
1vaoa.pdb             106  -----SGSVVLDMGKNMNRVLEVNVEG---AYCVVEPGVTYHDLHNYLEANNLRDKLW-L  156
                                   v  d     n                  pG t       l    l       

1diia.pdb             145  SFSAPS-AIAGPVGNTMDRGVGY---------TPY---GE-HFMMQCGMEVVLA----NG  186
1f0xa.pdb             132  SVIGSSCIGASVIGGICNNSGGS---------LVQR--GPA---YTEMSLFARINEDGK-  176
1i19a.pdb             128  NLPAP--GVLSIGGALAVNAHGAALPAVGQTTLPGHTYGS-LSNLVTELTAVVWNGTTY-  183
1vaoa.pdb             157  DVPDL--GGGSVLGNAVERGVGY---------TPY---GD-HWMMHSGMEVVLA----NG  197
                                     s  G       G           p    G            v        

1diia.pdb             187  DVYRTGMGGVPG------------------SN----------TWQIFKW-----------  207
1f0xa.pdb             177  LTLVNH------LGIDLG-------ETPEQILSKLDDDRIKDDDVR---HDGRHAHDYDY  220
1i19a.pdb             184  ALETYQ------------------------------------------------------  189
1vaoa.pdb             198  ELLRTGMGALPD-----PKRPETMGLKPEDQP-------WSKIAHLFPY-----------  234
                                                                                       

1diia.pdb             208  ----------GYG---P----TLDGMFTQ-ANYGICTKMGFWLMPKP  236
1f0xa.pdb             221  VHRVRDIEADTPARYNAD--PDRLFESSGCAGKLAVFAVRLDTFEAE  265
1i19a.pdb             190  ------------------RNDPRITPLLTNLGRCFLTSVTMQAGPN-  217
1vaoa.pdb             235  ----------GFG---P----YIDGLFSQ-SNMGIVTKIGIWLMPNP  263
                                                               t       p  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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