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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 06:26:12 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/FAD-oxidase_C.html
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#====================================
# Aligned_structures: 4
#   1: 1diia.pdb
#   2: 1f0xa.pdb
#   3: 1i19a.pdb
#   4: 1vaoa.pdb
#
# Length:        441
# Identity:        5/441 (  1.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     10/441 (  2.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          276/441 ( 62.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1diia.pdb               1  PVFKPFEVIFEDEADIVEIVDA-------LRPLRMSN-TIPNSVVIAST-LWEAGSAHLT   51
1f0xa.pdb               1  KNQQVFYIGTN---QPEVLTEI-------RRHILANFENLPVAGEYMHR-DIYDIAE-L-   47
1i19a.pdb               1  FRQRCQSYTDI---PWRELFA-PKGADGRTFEKFVA---ESGGAEAIWYPFT--------   45
1vaoa.pdb               1  RGYQSYLITLPKDGDLKQAVDI-------IRPLRLGM-ALQNVPTIRHI-LLDAAVL-GD   50
                                                         r                             

1diia.pdb              52  RAQYTTEPGHTPDSVIKQMQKDTG----------MG-AWNLYAALY--------------   86
1f0xa.pdb              48  ------------------------PPRMKNWRD-KY-EHHLLLKMA--------------   67
1i19a.pdb              46  ---------------------------------EKPWMKVWTVSP-SLVGKPPQAREVSG   71
1vaoa.pdb              51  KRSYSSRTEPLSDEELDKIAKQLN----------LG-RWNFYGALY--------------   85
                                                                                       

1diia.pdb              87  --------------------------GTQEQVDVNWKIVTDVFKKLG-----KGRIVTQE  115
1f0xa.pdb              68  --------------------------G--DGVGEAKSWLVDYFKQA------EGDFFVC-   92
1i19a.pdb              72  PYNYIFSDNLPEPITDMIGAINAGNPG--IAPLFGPAMYEITKLGL-AATNANDIWGW--  126
1vaoa.pdb              86  --------------------------GPEPIRRVLWETIKDAFSAIP-----GVKFYFPE  114
                                                     G             d f                 

1diia.pdb             116  EAGDTQPFKYRAQLMSGVPNLQEFGLYNWR-------GGGGSMWFAPVSEA--R-GSECK  165
1f0xa.pdb              93  ------------------------TPEEGS-------K------------AFLHRFAAAG  109
1i19a.pdb             127  ------------------------SKDVQFYIKATTLR-LTEGGGAVVTSRANI-ATVIN  160
1vaoa.pdb             115  DTPENSVLRVRDKTMQGIPTYDELKWIDWL-------PNGAHLFFSPIAKV--S-GEDAM  164
                                                                                       

1diia.pdb             166  KQAAMAKRVLHKYG---L----D-YVAEFIVAP---------------------------  190
1f0xa.pdb             110  AAIRYQAVHS---DEVE----DILALDIALR--RN--------DTEWYEH------LPPE  146
1i19a.pdb             161  DFTEWFHERIEFYRAKGEFPLNG-PVEIRCCG-LDQAADVKVPSVGPP--TISATRPRPD  216
1vaoa.pdb             165  MQYAVTKKRCQEAG---L----D-FIGTFTVGM---------------------------  189
                                                                                       

1diia.pdb             191  -------------R-DMHHVIDVLYDRTNPEETKRADACFNELLDEFEKEGYA--VYR-V  233
1f0xa.pdb             147  IDSQLVHKLYYGHFMCYVFHQDYIVKKGV-----DVHALKEQMLELLQQRGAQ--YP--A  197
1i19a.pdb             217  H-PDW----------DVAIWLNVLGVPGTPGMFEFYREMEQWMRSHYNNDDA-TFRP-EW  263
1vaoa.pdb             190  -------------R-EMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWG--EYR-T  232
                                                                             g         

1diia.pdb             234  -N-------TR-----FQDRVAQSYG-----PV---KRKLEHAIKRAVDPNNILAPGRSG  272
1f0xa.pdb             198  -EHNVGH----------------LYK-----A-----PETLQKFYRENDPTNSMNPGIGK  230
1i19a.pdb             264  SKGWAFGPDPYTDNDIVTNKMRATYIEG--VP-TTENWDTARARYNQIDPHRVFTNG---  317
1vaoa.pdb             233  -H-------LA-----FMDQIMETYN-WNN-SS---FLRFNEVLKNAVDPNGIIAPGKSG  274
                                                   Y                       DP     pG   

1diia.pdb             273  -IDLNN-DF------------  279
1f0xa.pdb             231  -TS--------KRKNW-----  237
1i19a.pdb             318  FM--------------DKLLP  324
1vaoa.pdb             275  -VWPSQYSHVT-----WK-L-  287
                                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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