################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Sat Jul 23 02:02:11 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ENTH.html ################################################################################################ #==================================== # Aligned_structures: 3 # 1: 1eyha.pdb # 2: 1hg5a.pdb # 3: 1hx8a.pdb # # Length: 289 # Identity: 16/289 ( 5.5%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 97/289 ( 33.6%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 162/289 ( 56.1%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1eyha.pdb 1 HNY-SEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAF-SEIMSMIWKRLNDHGKNWR 58 1hg5a.pdb 1 ---GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS--SWV 55 1hx8a.pdb 1 ----QGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNA--NWV 54 s k VckATt e GPkkkhldyl ctne nv p la l eR n nWv 1eyha.pdb 59 HVYKAMTLMEYLIKTGSERVSQQCKENM-----------------------------YAV 89 1hg5a.pdb 56 VVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKS--------GLQGYDMSTFIR 107 1hx8a.pdb 55 VVYKSLITTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTGGMGVPGGRMGYDMSPFIR 114 vVyKslitthhLm yGnERf Qylas n fir 1eyha.pdb 90 QTLKDFQ----------------YVDRDGK---------------DQG------------ 106 1hg5a.pdb 108 RYSRYL-NEKAVSYRQVAFDFTKVKRGAD-GVMRTMNTEKLLKTVPIIQNQMDALLDFNV 165 1hx8a.pdb 115 RYAKYL-NEKSLSYRAMAFDFCKV---EG--SLRSMNAEKLLKTLPVLQAQLDALLEFDC 168 ry kyl v g p 1eyha.pdb 107 ------VNVREKAKQLVALLRDEDRLRE-----ERAHALKTKEKLAQTA----------- 144 1hg5a.pdb 166 NSNELTNGVINAAFMLLFKDA-------IRLFAAYNEGIINLLEKYFDMKKNQCKEGLDI 218 1hx8a.pdb 169 QSNDLSNGVINMSFMLLFRDL-------IRLFACYNDGIINLLEKYFDMNKKHARDALDL 221 ngVin afmLlf d yn giinllekyfdm 1eyha.pdb ------------------------------------------------- 1hg5a.pdb 219 YKKFLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSL--LDALEQH-- 263 1hx8a.pdb 222 YKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKAPSSLLDALEQHLATL 270 #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################