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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:48:03 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/EFTU_2.html
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#====================================
# Aligned_structures: 4
#   1: 1d2ea.pdb
#   2: 1dar.pdb
#   3: 1efca.pdb
#   4: 1eft.pdb
#
# Length:        128
# Identity:        7/128 (  5.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     52/128 ( 40.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           43/128 ( 33.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d2ea.pdb               1  -T--------------------RDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDE   39
1dar.pdb                1  --PLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSY   58
1efca.pdb               1  -----------------------AIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEE   37
1eft.pdb                1  PV--------------------RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDE   40
                                                  d  kPfl p e v  i grGtv tgr erG  k G e

1d2ea.pdb              40  CEFLGHS-KNIRTVVTGIEMF----HKSLDRAEAGDNLGALVRGL-KREDLRRGLVMAKP   93
1dar.pdb               59  VYNTT---KGRKERVARLLRMHANHREEVEELKAGDLGAVVG---LK--ETITGDTLVGE  110
1efca.pdb              38  VEIVGIK-ETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGI-KREEIERGQVLAKP   91
1eft.pdb               41  VEIVGLAPETRKTVVTGVEMH----RKTLQEGIAGDNVGLLLRGV-SREEVERGQVLAKP   95
                           ve  g      k  vtg em     rk l e  AGdn g l     k  e  rG vlakp

1d2ea.pdb              94  GSIQP---   98
1dar.pdb              111  DAPRVILE  118
1efca.pdb              92  G-------   92
1eft.pdb               96  GSITP---  100
                           g       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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