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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:40:50 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/E2_N.html
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#====================================
# Aligned_structures: 2
#   1: 1dtoa.pdb
#   2: 1qqha.pdb
#
# Length:        211
# Identity:       58/211 ( 27.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     58/211 ( 27.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           78/211 ( 37.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dtoa.pdb               1  HMETLCQRLNVCQDKILTHYENDSTDLRDHIDYWKHMRLECAIYYKAREMGFKHINHQVV   60
1qqha.pdb                  ------------------------------------------------------------     
                                                                                       

1dtoa.pdb              61  PTLAVSKNKALQAIELQLTLETIYNSQYSNEKWTLQDVSLEVYLTAPTGCIKKHGYTVEV  120
1qqha.pdb               1  ------KSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQV   54
                                 K KA  AIELQ  L     S Y  E WTLQD   E   T PT C KK G TV V

1dtoa.pdb             121  QFD-GD-NTMHYTNWTHIYIC-EEASVTVVEGQVDYYGLYYVHEGIRTYFVQFKDDAEKY  177
1qqha.pdb              55  YFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKY  114
                            FD    N M Y  W   Y              V   GLYYV EG  T    FK   EKY

1dtoa.pdb             178  SKNKVWEVHAGGQVILCPTSVFS--------  200
1qqha.pdb             115  GNTGTWEVHFGNNVIDCNDSMC-STSDDTVS  144
                                WEVH G  VI C  S           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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