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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:23:07 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Desulfoferrodox.html
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#====================================
# Aligned_structures: 2
#   1: 1dfx.pdb
#   2: 1dqia.pdb
#
# Length:        129
# Identity:       24/129 ( 18.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     24/129 ( 18.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           45/129 ( 34.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dfx.pdb                1  VEG----STDGAMEK-------HVPVIEKVDGGYLIKVG---SVPHPMEEKHWIEWIELL   46
1dqia.pdb               1  ---MISETIRSGD--WKGEKHVPVIEYEREGELVKVKVQVGKEIPHPNTTEHHIRYIELY   55
                                                  V   E        KV      PHP    H I  IEL 

1dfx.pdb               47  AD----GR-S--YTKFLK-P------------GDAPEAFFAIDA---SKVTAREYCNLHG   83
1dqia.pdb              56  FLPEGENFVYQVGRVEFTAHGESVNGPNTSDVYTEPIAYFVLKTKKKGKLYALSYCNIHG  115
                                                              P A F        K  A  YCN HG

1dfx.pdb               84  HWKAEN---   89
1dqia.pdb             116  LWENEVTLE  124
                            W  E    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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