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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:30:02 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DNA_pol_B.html
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#====================================
# Aligned_structures: 2
#   1: 1ih7a.pdb
#   2: 1qhta.pdb
#
# Length:        561
# Identity:       73/561 ( 13.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     73/561 ( 13.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          221/561 ( 39.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ih7a.pdb               1  SPIKTWDAIIFNSLKEQNKVIPQGR-SHPVQP---------YPGAFVKEPIPNRYKYVMS   50
1qhta.pdb               1  STGNLVEWFLLRKAYKRNELAPNKPDER----ELARRRGGYA-GGYVKEPERGLWDNIVY   55
                           S                N   P                     G  VKEP          

1ih7a.pdb              51  FDLTSLYPSIIRQVNISPETIAGTFKVAPLHDYINAVAERPS---DVYSC--SPNGMMYY  105
1qhta.pdb              56  LDFRSLYPSIIITHNVSPDTLN--------------------REGCKEYDVAPEVGHKFC   95
                            D  SLYPSII   N SP T                                   G    

1ih7a.pdb             106  KDRDGVVPTEITKVFNQRKEHKGYMLAAQRNGEIIKEALHNPNLSVDEPLDVDYRFDFSD  165
1qhta.pdb              96  KDFPGFIPSLLGDLLEERQKIKRKMKAT--------------------------------  123
                           KD  G  P         R   K  M A                                 

1ih7a.pdb             166  EIKEKIKKLSAKSLNEMLFR-AQRTEVAGMTAQINRKLLINSLYGALGNVWFRYYDLRNA  224
1qhta.pdb             124  --------------------VDPLEKKLLDYRQRAIKILANSFYGYYGYAKARWYCKECA  163
                                                           Q   K L NS YG  G    R Y    A

1ih7a.pdb             225  TAITTFGQMALQWIERKVNEYLNEVCGTEGEAFVLYGDTDSIYVSADKIIDKVGESKFRD  284
1qhta.pdb             164  ESVTAWGREYIEMVIRELEEK---FG-F----KVLYADTDGLHATIP-------------  202
                              T  G        R   E             VLY DTD                    

1ih7a.pdb             285  TNHWVDF--LDKFARERMEPAIDRGFREMCEYMNNKQHLMFMDREAIAGPPLGSKGIGGF  342
1qhta.pdb             203  -------GADAETVKKKAKEFLKYIN-------------LELEYEGFYV--------RGF  234
                                                                       E             GF

1ih7a.pdb             343  WTGKKRYALNVWDMEGTRYAEP-KLKIMGLETQKSSTPKAVQKALKECIRRMLQE-GEES  400
1qhta.pdb             235  FVTKKKYAVIDE---------EGKITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEE  285
                              KK YA               K    GLE                     L     E 

1ih7a.pdb             401  LQEYFKEFEKEFRQLNYISIASVSSANNIAKYDVGGFPGPKCPFHIRGILTYNRAI-PQV  459
1qhta.pdb             286  AVRIVKEVT----------LVIHEQI---------------ATGPHVAVAKRLAARGVKI  320
                                KE                                               A     

1ih7a.pdb             460  VEGEKVYVLPLREGNPFGDKC--IAWPSGTEITDLIKDDVLHWMDYTVLLEKTFIKPLEG  517
1qhta.pdb             321  RPGTVISYIVLK---------GDRAIPADEF--------------E-YYIENQVLPAVER  356
                             G       L             A P                       E       E 

1ih7a.pdb             518  FTSAAKLDYEKKASLFDMFDF  538
1qhta.pdb             357  ILKAFGY--------------  363
                              A                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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