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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 06:06:05 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DEAD.html
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#====================================
# Aligned_structures: 4
#   1: 1c4oa.pdb
#   2: 1d9xa.pdb
#   3: 1hv8a.pdb
#   4: 1qdea.pdb
#
# Length:        482
# Identity:       12/482 (  2.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     34/482 (  7.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          353/482 ( 73.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1c4oa.pdb               1  -------TFR-YR---------------------GPSPKGDQPKAIAGLVEALRDGERFV   31
1d9xa.pdb               1  EG-----RFQLVA---------------------PYEPQGDQPQAIAKLVDGLRRGVKHQ   34
1hv8a.pdb               1  --VE----------YNFNELNLSDNILNAIRNKGFEKPTDIQ-KVIPLFLND---EY-NI   43
1qdea.pdb               1  ----IQTNYD-KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEG----H-DV   50
                                                                P   Q  aI              

1c4oa.pdb              32  TLLGATGTGKTVTMAKVIEALG-R-----PALVLAPNKILAAQLAAEFRELFPENA--VE   83
1d9xa.pdb              35  TLLGATGTGKTFTISNVIAQVN-K-----PTLVIAHNKTLAGQLYSELKEFFPHNA--VE   86
1hv8a.pdb              44  VAQARTGSGKTASFAIPLIELVNENN-GIEAIILTPTRELAIQVADEIESLKGNKNLKIA  102
1qdea.pdb              51  LAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVH  110
                                tGtGKT t                 al lap   LA Q   e   l       v 

1c4oa.pdb              84  YFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYG  143
1d9xa.pdb              87  YFVSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVSCIYG  146
1hv8a.pdb             103  KIYGG-K-----------------------AIYPQIKAL-KNA-----NIVVGTPGRIL-  131
1qdea.pdb             111  ACI----------------------------------GL-RDA-----QIVVGTPGRVF-  129
                                                                            IvV     i  

1c4oa.pdb             144  LGDPRE----YRARNLV-------------------------------------------  156
1d9xa.pdb             147  LGSPEE----YRELVVSLRVGMEIERNALLRRLVDIQYDRNDIFRGTFRVRGDVVEIFPA  202
1hv8a.pdb             132  ------DHINR-------------------------------------------------  136
1qdea.pdb             130  ------DNIQR-------------------------------------------------  134
                                                                                       

1c4oa.pdb             157  --------------------------------GFVLFPATHYLSPE---GLEEILKEIE-  180
1d9xa.pdb             203  SRDEHCIRVEFFGDEIEAEVDALTGKVLGEREHVAIFPASHFVT--REEKMRLAIQNIE-  259
1hv8a.pdb             137  -----------------------------------------------------------G  137
1qdea.pdb             135  -----------------------------------------------------------R  135
                                                                                       

1c4oa.pdb             181  -------------KELWERV--RYFEERGEVLYA-----QRLKERTLYDLEMLRVMGTCP  220
1d9xa.pdb             260  -------------QELEERL--AELRAQG-----KLLEAQRLEQRTRYDLEMMREMGFCS  299
1hv8a.pdb             138  TLNLKNVKYFILDEADE---LN--------------------------------------  156
1qdea.pdb             136  RFRTDKIKMFILDEADEM--LSS-------------------------------------  156
                                           e                                           

1c4oa.pdb             221  GVENYARYFTGKAPGEPPY-------TLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYAR  273
1d9xa.pdb             300  GIENYSRHLALRPPGSTPY-------TLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRAR  352
1hv8a.pdb             157  -------------------GFIKDVEKILNACNKDKRILLFS------------------  179
1qdea.pdb             157  -------------------GFKEQIYQIFTLLPPTTQVVLLS------------------  179
                                                       l   p d    l                    

1c4oa.pdb             274  KKTLVDYGFRLPSALDNRPL-----RFEEFLERVSQVVFVSATPGPFELAHSGRVVEQII  328
1d9xa.pdb             353  KQVLVDHGFRLPSALDNRPL-----TFEEFEQKINQIIYVSATPGPYELEHSPGVVEQII  407
1hv8a.pdb             180  --------------------AT-PREILNLAKKYG-----------------DYSFIKAK  201
1qdea.pdb             180  --------------------ATMPNDVLEVTTKFM-----------------RNPVRI-L  201
                                                       e   k                      v    

1c4oa.pdb             329  RP  330
1d9xa.pdb             408  RP  409
1hv8a.pdb             202  I-  202
1qdea.pdb                  --     
                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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