################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 19:21:32 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DAP_epimerase.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1bwza1.pdb # 2: 1bwza2.pdb # # Length: 159 # Identity: 18/159 ( 11.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 18/159 ( 11.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 46/159 ( 28.9%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1bwza1.pdb 1 MT--GEATHIY--------------DGFIT--LMQFSKMHGLGNDFVVVDGV---TQNVF 39 1bwza2.pdb 1 --NMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLCG-AVSMGNPHCVVQVDDIQTAN-- 55 GE GN VV T N 1bwza1.pdb 40 FTPETIRRLANR-HC-GIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCG--NGARCF 95 1bwza2.pdb 56 -VEQLGPLLESHERFPE--RVNAGFMQI-INKE-HIKLRVYERG-AGETQ-ACGSGACAA 108 L E R Q GA 1bwza1.pdb 96 ARFVTLKGLTNKKDISVSTQKGNMVLTVKDMNQIR---- 130 1bwza2.pdb 109 VAVGIMQGLL-NNNVQVDLPGGSLMIEWNGV----GHPL 142 GL V G #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################