################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 19:15:01 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Cys_knot.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1fl7b.pdb # 2: 1hcnb.pdb # # Length: 120 # Identity: 34/120 ( 28.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 34/120 ( 28.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 23/120 ( 19.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1fl7b.pdb 1 -------CELTNITIAIEKEECRFCISINTAWCAGYCYTRDLVYKDPARPKIQKTCTFKE 53 1hcnb.pdb 1 KEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVCNYRD 60 C N T A EKE C CI NT CAGYC T V Q C 1fl7b.pdb 54 LVYETVRVPG-CAHHAD-SLYTYPVATQCHCGKCDSDSTDCTVRGLGPSYCSFGE-M--- 107 1hcnb.pdb 61 VRFESIRLPGCPR--GVNPVVSYAVALSCQCALCRRSTTDCGGPKDH--------PLTCD 110 E R PG Y VA C C C TDC #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################