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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:07:55 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CoA_trans.html
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#====================================
# Aligned_structures: 2
#   1: 1k6da.pdb
#   2: 1poia.pdb
#
# Length:        326
# Identity:       45/326 ( 13.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     45/326 ( 13.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          118/326 ( 36.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1k6da.pdb               1  MKTKLMT-LQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGVRDLTLIANDTAFVDT   59
1poia.pdb               1  --SKVMTLKDAIAKYVHSGDHIALGGFTTDRKPYAAVFEILRQGITDLTGLGGAAG---G   55
                              K MT           G  I  GGF     P   V   L  G  DLT           

1k6da.pdb              60  GIGPLIVNGRVRKVIASHI-------GTNPETGRRMISGEMDVVLVPQGTLIEQIRCGGA  112
1poia.pdb              56  DWDMLIGNGRVKAYINCYTANSGVTNV-SRRFRKWFEAGKLTMEDYSQDVIYMMWHAAAL  114
                               LI NGRV   I                       G        Q            

1k6da.pdb             113  GLGGFLTPTGVGTVE---------------------GKQTLTL---DGKTWLLERPLRAD  148
1poia.pdb             115  GLPFLPVTLMQGSG-LTDEWGISKEVRKTLDKVPDDKFKYIDNPFKPGEKVVAVPVPQVD  173
                           GL         G                                   G           D

1k6da.pdb             149  LALIRAHRCDTLGNLTYQLSARNFNPLIALAADITLVEPDELVETGEL--QPDHIVTPGA  206
1poia.pdb             174  VAIIHAQQASPDGTVRIWG-GKFQDVDIAEAAKYTIVTCEEIISDEEIRRDPTKNDIPGM  232
                            A I A      G              IA AA  T V   E     E    P     PG 

1k6da.pdb             207  VIDHIIVS----------------------------------------------------  214
1poia.pdb             233  CVDAVVL-APYGAHPSQCYGLYDYDNPFLKVYDKVSKTQEDFDAFCKEWVFDLKDHDEYL  291
                             D                                                         

1k6da.pdb             215  ---------------------QES--  217
1poia.pdb             292  NKLGATRLINLKVVPGLGYHIDMTKE  317
                                                     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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