################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 19:04:08 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CCP_MauG_C.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1eb7a.pdb # 2: 1iqca.pdb # # Length: 166 # Identity: 60/166 ( 36.1%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 60/166 ( 36.1%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 21/166 ( 12.7%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1eb7a.pdb 1 TPDSPFDLYLKGDDKALDAQQKKGLKAFMDSGCSACHNGINLGGQAYFPF-G---LV-KK 55 1iqca.pdb 1 TPGSKFDKWLEGDKNALNQDELEGYNLFKGSGCVQCHNGPAVGGSSYQKMGVFKPYETKN 60 TP S FD L GD AL G F SGC CHNG GG Y K 1eb7a.pdb 56 PDA----DKGRFAVTKTQSDE--YVFRAAPLRNVALTAPYFHSGQVWELKDAVAIMGNAQ 109 1iqca.pdb 61 ---PAAGRMDVT-----GNEADRNVFKVPTLRNIELTYPYFHDGGAATLEQAVETMGRIQ 112 VF LRN LT PYFH G L AV MG Q 1eb7a.pdb 110 LGKQLAPDDVENIVAFLHSLSGKQPRVEYPLLPASTETTPRPAE-- 153 1iqca.pdb 113 LNREFNKDEVSKIVAFLKTLTGDQPDFKLPILPPSNNDTPRSQPYE 158 L D V IVAFL L G QP P LP S TPR #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################