################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 19:02:43 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CASc.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1bmq.pdb # 2: 1cp3a.pdb # # Length: 274 # Identity: 63/274 ( 23.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 63/274 ( 23.0%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 61/274 ( 22.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1bmq.pdb 1 GNVKLCSLEEAQRIWKQKSAEIYPIMDKSSR-TRLALIICNEEFD---SIPRRTGAEVDI 56 1cp3a.pdb 1 --------------------NSYKMD-YP--EMGLCIIINNKNFHKSTGMTSRSGTDVDA 37 Y L II N F R G VD 1bmq.pdb 57 TGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGK 116 1cp3a.pdb 38 ANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKED-HSKRSSFVCVLLSHGEEGIIFGT 96 NL Y V K LT H S V SHG I G 1bmq.pdb 117 KHSEQVPDILQLNAIFNMLNTKNCPSLKDKPKVIIIQACRGDSPGVVWFKDAI---KKAH 173 1cp3a.pdb 97 N------GPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDC-------GIEHKIP 143 L I N C SL KPK IIQACRG K 1bmq.pdb 174 IEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQP-- 231 1cp3a.pdb 144 VDADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVAT-EF 202 DF S P SWR GS FI L YA I V 1bmq.pdb 232 --------D-GRAQMPTTERVTLTRCFYLFPGH- 255 1cp3a.pdb 203 ESFSFDATFHAKKQIPCIV-SMLTKELYFY---H 232 Q P LT Y #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################