################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Sat Jul 23 01:07:51 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/C2.html ################################################################################################ #==================================== # Aligned_structures: 3 # 1: 1a25a.pdb # 2: 1djxa.pdb # 3: 1rsy.pdb # # Length: 148 # Identity: 18/148 ( 12.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 55/148 ( 37.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 34/148 ( 23.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1a25a.pdb 1 ---E-RRGRIYIQAHIDR---EVLIVVVRDAKNLVPMDP-N-GLSDPYVKLKLIP----D 47 1djxa.pdb 1 DQH-P-SATLFVKISIQDWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRD- 57 1rsy.pdb 1 ----EKLGKLQYSLDYDFQN-NQLLVGIIQAAELPALDM-G-GTSDPYVKVFLLP----D 49 g l id e L V ii a Lp d g sDPyVkv l p 1a25a.pdb 48 PKSESKQKTKTIKCSL-NPEWNETFRFQLK-ESDKDRRLSVEIWDWDLTSRNDFMGSLSF 105 1djxa.pdb 58 ---TGSRQTAVITNNGFNPRWDMEFEFEVT--VPDLALVRFMVEDYDSSSKNDFIGQSTI 112 1rsy.pdb 50 --KKKKFETKVHRKTL-NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 106 k Tkvi l NP wne F F v l v D D SknDfiG 1a25a.pdb 106 GISELQ-KAGVDGWFKLLSQEEGEYFNV 132 1djxa.pdb 113 PWNSLKQ---GYRHVHLLSKNG------ 131 1rsy.pdb 107 PMNTVDFGHVTEEWRDLQSA-------- 126 p n l w LlS #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################