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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:56:32 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Bac_globin.html
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#====================================
# Aligned_structures: 2
#   1: 1dlwa.pdb
#   2: 1dlya.pdb
#
# Length:        121
# Identity:       45/121 ( 37.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     45/121 ( 37.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            5/121 (  4.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dlwa.pdb               1  SLFEQLGGQAAVQAVTAQFYANIQADATVATFFNGIDMPNQTNKTAAFLCAALGGPNAWT   60
1dlya.pdb               1  SLFAKLGGREAVEAAVDKFYNKIVADPTVSTYFSNTDMKVQRSKQFAFLAYALGGASEWK   60
                           SLF  LGG  AV A    FY  I AD TV T F   DM  Q  K  AFL  ALGG   W 

1dlwa.pdb              61  GRNLKEVHANM--GVSNAQFTTVIGHLRSALTGAGVAAALVEQTVAVAETVRGDVVTV--  116
1dlya.pdb              61  GKDMRTAHKDLVPHLSDVHFQAVARHLSDTLTELGVPPEDITDAMAVVASTRTEVLNMPQ  120
                           G      H       S   F  V  HL   LT  GV         AV    R  V     

1dlwa.pdb                  -     
1dlya.pdb             121  Q  121
                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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