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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:29:19 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Antifreeze.html
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#====================================
# Aligned_structures: 3
#   1: 1msi.pdb
#   2: 1ops.pdb
#   3: 3rdn.pdb
#
# Length:         74
# Identity:       35/ 74 ( 47.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     57/ 74 ( 77.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           10/ 74 ( 13.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1msi.pdb                1  AAQASVVANQLIPINTALTLVMMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGTTLMPDM   60
1ops.pdb                1  --SQSVVATQLIPMNTALTPAMMEGKVTNPIGIPFAEMSQLVGKQVNTPVAKGQTLMPNM   58
3rdn.pdb                1  -NKASVVANQLIPINTALTLIMMKAEVVTPMGIPAEEIPNLVGMQVNRAVPLGTTLMPDM   59
                              aSVVAnQLIPiNTALTl MM  eVvtP GIPaeeip LVgmQVNraVplGtTLMPdM

1msi.pdb               61  VKGYAA--------   66
1ops.pdb               59  VKTYAA--------   64
3rdn.pdb               60  VKNYEDGTTSPGLK   73
                           VK Yaa        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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