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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:09:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Amidase_2.html
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#====================================
# Aligned_structures: 2
#   1: 1iyaa.pdb
#   2: 1lba.pdb
#
# Length:        207
# Identity:       26/207 ( 12.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     26/207 ( 12.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           81/207 ( 39.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1iyaa.pdb               1  MLLDEGWLAEARRVPSPHY-DCRPDDENPSLLVVHN-ISLPPGEFG--GPWIDALFTGTI   56
1lba.pdb                1  -------------------AKQR---ESTDAIFVHCSATK-PSQNVGVREIRQWHKEQ--   35
                                                 R   E      VH      P                  

1iyaa.pdb              57  DPNAHPYFAGIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSSYQGRERCNDF----S  112
1lba.pdb               36  --GWLDV---------GYHFIIKRDGTVEAGRDEMAVGSHA--------------KGYNH   70
                                             H  I RDG             HA                   

1iyaa.pdb             113  IGIELEGTDT--------LAYTDAQYQQLAAVTNALITRYPAIANNMTGHCNIAPERKTD  164
1lba.pdb               71  NSIGVCLVGGIDDKGKFDANFTPAQMQSLRSLLVTLLAKYEG--AVLRAHHEV-APK---  124
                             I                  T AQ Q L      L   Y         H          

1iyaa.pdb             165  PG--PSFDWARFRALVTPSSHKEM-T-  187
1lba.pdb              125  --ACPSFDLKRWWEKN---ELVTSDRG  146
                               PSFD  R                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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