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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:21:01 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ald_Xan_dh_2.html
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#====================================
# Aligned_structures: 2
#   1: 1alo.pdb
#   2: 1qj2b.pdb
#
# Length:        857
# Identity:      145/857 ( 16.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    145/857 ( 16.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          201/857 ( 23.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1alo.pdb                1  ----------------D-YGADLGLKMPA----------GTLHLAMVQAK-V--SHANIK   30
1qj2b.pdb               1  TSAERAEKLQGMGCKRKRVEDIRFTQG--KGNYVDDVKLPGMLFGDFVRSSHAHARIK-S   57
                                                                                       

1alo.pdb               31  GIDTSEALTMPGVHSVITHKDVKG-----------KNRITGLITFPTNKGDG--WDRPIL   77
1qj2b.pdb              58  IDTSKAKALP----------GVFAVLTAADLKPLNLHYMPTL----------AGDVQAVL   97
                                                V                   L                 L

1alo.pdb               78  CDEKVFQYGDCIALVCADSEANARAAAEKVKVDLEELPAYMSGPAAAAEDAIEIHPGT--  135
1qj2b.pdb              98  ADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEPDAPLLRE--DI  155
                            DEKV       A V A     A  A E V VD E LP       A   DA         

1alo.pdb              136  -------------PNVYFEQPIVKGE---DTGPIFASADVTVEGDFYVGRQPHMPIEPDV  179
1qj2b.pdb             156  KDKMTGAHGARKHHNHIFRWEIG---DKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQ  212
                                         N  F   I        T   FA A V     F   R    P E   

1alo.pdb              180  AFAYMG-DDGKCYIHSKSIGVHLHLYMIAPGVGLEPDQLVLVANPMGGTFGYKFSPT-SE  237
1qj2b.pdb             213  CVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGY  272
                             A M    G           H          GL        A   GG FG K       

1alo.pdb              238  ALVAVAAMATGRPVHLRYNYQQQQQYTGKRSPWEMNVKFAAKKDGTLLAMESDWLVDHGP  297
1qj2b.pdb             273  VCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGA  332
                               VA    G PV            T       M    AA KDG  LAM    L DHG 

1alo.pdb              298  YSEFGDLL-------TLRGAQFIGAGYNIPNIRGLGRTVATNHVWG-SAFRGYGAPQSMF  349
1qj2b.pdb             333  FDAC----ADPSKWPAGFM-NICTGSYDMPVAHLAVDGVYTNKASGGVAYRSFRVTEAVY  387
                                                     Y  P        V TN   G  A R         

1alo.pdb              350  ASECLMDMLAEKLGMDPLELRYKNAYRPGD---TNPTGQEPEVFSLPDMIDQLRPKYQ--  404
1qj2b.pdb             388  AIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYH  447
                           A E     LA  L MD   LR KN   P       P G E      P             

1alo.pdb              405  AALEKAQKES--T----ATHKKGVGISIGVYGSGL-D---------GPDASEAWAELNAD  448
1qj2b.pdb             448  QLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVS-MFDSAEIRIHPT  506
                                                 G GIS      G                  A       

1alo.pdb              449  GTITVHTAWEDHGQGADIGCVGTAHEALRPMGVAPEKIKFTWPNTATTPNSGPSGGSREQ  508
1qj2b.pdb             507  GSVIARMGTKSQGQGHETTYAQIIATELG---IPADDIMIEEGNTDTAPYGLGTYGSRST  563
                           G           GQG            L         I     NT T P      GSR  

1alo.pdb              509  VMTGNAIRVACENLLKACEKP---------------------------GGGYY---TYDE  538
1qj2b.pdb             564  PTAGAATAVAARKIKAKAQ--MIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWA  621
                              G A  VA                                                  

1alo.pdb              539  LKAAD------KPTKITGNWTASGATHCDAVTGLGKPF--VVYMYGVFMAEVTVDVATGQ  590
1qj2b.pdb             622  SYNS-PPPNLEPGLEAVNYYDP----------------PNMTYPFGAYFCIMDIDIDTGV  664
                                                                     Y  G        D  TG 

1alo.pdb              591  TTVDGMTLMADLGSLCNQLATDGQIYGGLAQGIGLALSEDFEDI-----KKHATLVGAGF  645
1qj2b.pdb             665  AKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRY-DEQGNVLGASFMDFFL  723
                                     D G   N     GQ  GGL      A                A       

1alo.pdb              646  PFIKQIPDKLDIVYVNHPRPDGPFGASGVGELPLTSPHAAIINAIKSATG---VRIYRLP  702
1qj2b.pdb             724  PTAVETP-KWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNAGHIQMP  782
                           P     P K    Y   P P  P GA GVGE P         NA   A           P

1alo.pdb              703  AYPEKVLEALKA-----  714
1qj2b.pdb             783  HDAWRLWKVGEQLGLHV  799
                                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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