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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:23:48 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/AhpC-TSA.html
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#====================================
# Aligned_structures: 3
#   1: 1prxa.pdb
#   2: 1qmva.pdb
#   3: 1qq2a.pdb
#
# Length:        236
# Identity:       41/236 ( 17.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    132/236 ( 55.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           79/236 ( 33.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1prxa.pdb               1  ---LLLGDVAPNFEANTTV---GRIR-FHDFLGDSWGILFSHPRDFTPV-TTELGRAAKL   52
1qmva.pdb               1  SGNARIGKPAPDFKATAVV-DGAFKEVKLSDYKGKYVVLFFYPLDFTFV-PTEIIAFSNR   58
1qq2a.pdb               1  SGNAKIGHPAPSFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDR   60
                              a iG pAP FkAtavv    fk   lsdykgkyvvlFfyPlDFTfV pTEiiafs r

1prxa.pdb              53  APEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPT-EKLPFPIIDDRNRELAILLGM  111
1qmva.pdb              59  AEDFRKLGCEVLGVSVDSQFTHLAWINTP-R---KEGGLGPLNIPLLADVTRRLSEDYGV  114
1qq2a.pdb              61  AEEFKKLNCQVIGASVDSHFSHLAWINTP-K---KQGGLGPMNIPLVSDPKRTIAQDYGV  116
                           AeeF Klnc vig SvDS f HLAWintp     kegg gplniPl  D  R la dyGv

1prxa.pdb             112  LDPAEKDEKGMPVT---ARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEK  168
1qmva.pdb             115  LKTDE---------GIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEH  165
1qq2a.pdb             117  LKADE---------GISFRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQFTDKH  167
                           Lk dE             RglFiid kg Lrqit ndlpvGRsvDEiLRlVqafQ Tdeh

1prxa.pdb             169  RV-ATPVDWKDGDSVMVLPTIPE-EEAKKLFPKGVFTKELPSGKKYLRYTPQP---  219
1qmva.pdb             166  GE-VCPAGWKPGSDTIKPN-V---DDSKEYFS---------------------KHN  195
1qq2a.pdb             168  GEV------------------CPA--------------------------------  173
                           ge                                                      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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