################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 18:16:35 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Acetyltransf2.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1e2ta.pdb # 2: 1gx3a.pdb # # Length: 288 # Identity: 93/288 ( 32.3%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 93/288 ( 32.3%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 26/288 ( 9.0%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1e2ta.pdb 1 HMT---SFLHAYFTRLHCQPLGVPTVEALRTLHLAHNCAIPFENLDVLLPREI-QLDETA 56 1gx3a.pdb 1 ---GMAMDLGGYLTRIGLDGRPRPDLGTLHAIVAAHNRSIPFENLDPLLGIPVADLSAEA 57 L Y TR P L AHN IPFENLD LL L A 1e2ta.pdb 57 LEEKLLYARRGGYCFELNGLFERALRDIGFNVRSLLGRVILSHP---ASLPPRTHRLLLV 113 1gx3a.pdb 58 LFAKLVDRRRGGYCYEHNGLLGYVLEELGFEVERLSGRVVWMR-ADDAPLPAQTHNVLSV 116 L KL RRGGYC E NGL L GF V L GRV A LP TH L V 1e2ta.pdb 114 DV--EDEQWIADVGFGGQTLTAPLRLQAEIAQQTPHGEYRLMQEGSTWILQFRHHEHWQS 171 1gx3a.pdb 117 AVPGADGRYLVDVGFGGQTLTSPIRLEAGPVQQTRHEPYRLTRHGDDHTLAAQVRGEWQP 176 V D DVGFGGQTLT P RL A QQT H YRL G L WQ 1e2ta.pdb 172 MYCFDLGVQQQSDHVMGNFWSAHWPQSHFRHHLLMCRHLPDGGKLTLTNFHFTRYHQGHA 231 1gx3a.pdb 177 LYTFTTEPRPRIDLEVGSWYVSTHPGSHFVTGLTVAVVTDD-ARYNLRGRNLAVHRSGA- 234 Y F D G P SHF L D L G 1e2ta.pdb 232 VEQVNVPDVPSLYQLLQQQFGLGVND-VKHGFTEA-ELAAVMAAF--- 274 1gx3a.pdb 235 TEHIRFDSAAQVLDAIVNRFGIDLGDLAG------RDVQARVAEVLDT 276 E FG D A A #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################