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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:45:12 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/AP_endonuc_2.html
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#====================================
# Aligned_structures: 3
#   1: 1i60a.pdb
#   2: 1k77a.pdb
#   3: 1qtwa.pdb
#
# Length:        329
# Identity:       14/329 (  4.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     79/329 ( 24.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          107/329 ( 32.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1i60a.pdb               1  M-KYIGAHV----SAAGGLANAAIRAAEIDATAFALFTK-NQ----RQWRAAPLTTQ---   47
1k77a.pdb               1  --KLCFNEATTLE--NSNLKLDLELCEKHGYDYIEI-RTD-KLPEYL----------KDH   44
1qtwa.pdb               1  -PRFAANLS----FTEVPFIERFAAARKAGFDAVEF-LF--P----Y----------N-Y   37
                             k   n           l      a k g da e                         

1i60a.pdb              48  TIDEFKAACEKYHYTSAQILPHDSYLI--------NLGHPVTEALEKSRDAFIDEMQRCE   99
1k77a.pdb              45  SLDDLAEYFQTHHIKPL---ALNAL-V--------FFNNRDEKGHNEIITEFKG--ETCK   90
1qtwa.pdb              38  STLQIQKQLEQNHLTLA--LFNTAPG-DINAGEWGLSALP--GREHEAHADIDLALEYAL   92
                           s d      e  H t a      a               p      e    f    e c 

1i60a.pdb             100  QLGLSLLNFHPGSH-LMQISEEDCLARIAESINIALDKTQ--GVTAVIENTAG--QGSNL  154
1k77a.pdb              91  TLGVKYVVAVPLVTE-QKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGH---PQCT  146
1qtwa.pdb              93  ALNCEQVHVA-GVV-PAGEDAERYRAVFIDNIRYAADRFAPHGKRILVEALSPGVKPHYL  150
                            Lg   v    gv     i  E   a   d i  a D     Gv i  E       p  l

1i60a.pdb             155  GFKFEHLAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARTVGFKYLRG  214
1k77a.pdb             147  VNTFEQAYEIVNTVNR-DNVGLVLDSFHFHAG-S----------NIESLK-QADGKKIFI  193
1qtwa.pdb             151  FSSQYQALAIVEEVAR-DNVFIQLDTFHAQKVD-G-----NLTHLIRD-----YAGKYAH  198
                              feqa aIv  V r dnVg  lDtfHa a              i d       kk   

1i60a.pdb             215  MHLNDAKS-TFGS----RVDRHHSLGEGNI-GHDAFRWIMQDDRFDGIPLILETIN--P-  265
1k77a.pdb             194  YHIDDTEDFPIGFLTDE---DRVWPGQGAIDLDAHLSALKEIG--FSDVVSVELFR--PE  246
1qtwa.pdb             199  VQIAGLP-------------DRHEPDDGEINYPWLFRLFDEVG--YQGWIGCEYKPRGLT  243
                            hi d               drh pg G I     fr   e g         E     p 

1i60a.pdb             266  -D------IWAEEIAWLKAQQTE-K-AVA  285
1k77a.pdb             247  YYKLTAEEAIQTAKKTTVDVVSKYFS---  272
1qtwa.pdb             244  EE-------GLGWFDAWRGS---------  256
                                                        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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