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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:24:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ALBUMIN.html
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#====================================
# Aligned_structures: 3
#   1: 1bj51.pdb
#   2: 1bj52.pdb
#   3: 1bj53.pdb
#
# Length:        212
# Identity:       16/212 (  7.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     73/212 ( 34.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           33/212 ( 15.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bj51.pdb               1  HKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPFEDHVKLVNEVTEFAKTCVAD----ES   56
1bj52.pdb               1  ---LKCASLQKFGERAFKAWAVARLSQRFPKAEFAEVSKLVTDLTKVHTECCHG------   51
1bj53.pdb               1  ---QNCELFEQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAK--   55
                                c  f  lGE  Fka  l r  q  pq  f   vklv  ltkv   Cc        

1bj51.pdb              57  AENCDKSLHTLFGDKLCTVATLRE--TYGEMADCCAKQEPERNECFLQHK-DDN--PNLP  111
1bj52.pdb              52  DLLECADDRADLAKYICEN--QDS--ISSKLKECCEKPLLEKSHCIAEVE-NDEMPADLP  106
1bj53.pdb              56  RMPCAEDYLSVVLNQLCVL--HEKTPVSDRVTKCCTESLVNRRPCFSALEVDET--YVPK  111
                              c  d        lC          s     CC k l er  Cf   e dd     lp

1bj51.pdb             112  RLVRPE---VDVMCTAFHD---NEETFLKKYLYEIARRHPYFYAPELLFFAKRYKAAFTE  165
1bj52.pdb             107  SLA-ADFVESKDVCKNYAE---AKDVFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEK  162
1bj53.pdb             112  EFNAETFTF---HADICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEK  168
                            l           c            fl   LyE arrhP      Ll  ak y a  ek

1bj51.pdb             166  CCQAADKAAC--LLPKLDELRDEGKASSAKQR  195
1bj52.pdb             163  CCAAADPH--ECYAKVFDEFKPLVEEPQNLIK  192
1bj53.pdb             169  CCKADDKETC--FAEEGKKLVAASQAALG---  195
                           CC AaDk      a   del     a      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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