# MMLSUM Exp_Change = 0.9 log odds matrix (in 1/4-bit units)
# Default Gap-open  = 14.6838
# Default Gap-extn  = 0.8198
# Notes: Matrix derived from MMLSUM (t = 373) Markov Matrix
# File generated on: 2020/10/02 12:50:15
    A        R        N        D        C        Q        E        G        H        I        L        K        M        F        P        S        T        W        Y        V        
A   1.0177  -0.1825  -0.1897  -0.3525   0.2484  -0.0109  -0.0367   0.4428  -0.4544  -0.1987  -0.2873  -0.0777  -0.1717  -0.7046   0.0268   0.3742   0.1459  -1.3382  -0.7638   0.0522 
R  -0.1825   2.5567   0.5278   0.4784  -1.3811   1.0334   0.9055  -0.7066   0.8016  -1.3325  -1.1491   1.7281  -0.7013  -1.3801  -0.2652   0.1952   0.0499  -1.0855  -0.4939  -1.2201 
N  -0.1897   0.5278   2.3561   1.8457  -1.4115   0.6797   0.9065   0.7192   0.6763  -1.9516  -1.9369   0.8046  -1.2879  -1.7948   0.0225   0.7347   0.3312  -1.9443  -0.7189  -1.6609 
D  -0.3525   0.4784   1.8457   3.7400  -2.2904   0.9363   1.9545   0.5043   0.2847  -2.7310  -2.6493   0.9493  -1.8665  -2.6986   0.1659   0.7087   0.2282  -2.7349  -1.5585  -2.3207 
C   0.2484  -1.3811  -1.4115  -2.2904  10.9276  -1.4492  -1.9731  -1.7056  -1.0166   0.4228   0.4828  -1.7314   0.2896   0.4465  -1.7897  -0.1988  -0.3339  -0.3229  -0.0582   0.6015 
Q  -0.0109   1.0334   0.6797   0.9363  -1.4492   1.4974   1.2961  -0.5225   0.7425  -1.2967  -1.1636   1.1180  -0.6405  -1.3988   0.0175   0.3659   0.2155  -1.5113  -0.6300  -1.0915 
E  -0.0367   0.9055   0.9065   1.9545  -1.9731   1.2961   2.2926  -0.3796   0.3166  -1.8664  -1.8104   1.2177  -1.1941  -2.1043   0.1938   0.4729   0.2292  -2.2879  -1.2174  -1.5263 
G   0.4428  -0.7066   0.7192   0.5043  -1.7056  -0.5225  -0.3796   5.5389  -0.6606  -2.6157  -2.5181  -0.4301  -1.8787  -2.3547  -0.1553   0.5990  -0.3557  -2.7040  -1.9372  -2.1728 
H  -0.4544   0.8016   0.6763   0.2847  -1.0166   0.7425   0.3166  -0.6606   4.8770  -1.3358  -1.0705   0.5160  -0.7255  -0.2631  -0.6136   0.0066  -0.1753   0.1377   1.2151  -1.2200 
I  -0.1987  -1.3325  -1.9516  -2.7310   0.4228  -1.2967  -1.8664  -2.6157  -1.3358   2.7329   2.2267  -1.5504   1.6208   1.4030  -1.4951  -1.1947  -0.3875  -0.1401   0.0491   2.3315 
L  -0.2873  -1.1491  -1.9369  -2.6493   0.4828  -1.1636  -1.8104  -2.5181  -1.0705   2.2267   2.6332  -1.4737   1.8427   1.7538  -1.6300  -1.2643  -0.5886   0.4273   0.3859   1.7565 
K  -0.0777   1.7281   0.8046   0.9493  -1.7314   1.1180   1.2177  -0.4301   0.5160  -1.5504  -1.4737   1.9788  -0.9103  -1.8052   0.1472   0.3866   0.2232  -1.9451  -0.9619  -1.3504 
M  -0.1717  -0.7013  -1.2879  -1.8665   0.2896  -0.6405  -1.1941  -1.8787  -0.7255   1.6208   1.8427  -0.9103   2.2359   1.2463  -1.3917  -0.7931  -0.3339   0.4348   0.3875   1.2144 
F  -0.7046  -1.3801  -1.7948  -2.6986   0.4465  -1.3988  -2.1043  -2.3547  -0.2631   1.4030   1.7538  -1.8052   1.2463   4.0906  -1.6983  -1.3415  -0.8101   2.8242   2.8672   0.9909 
P   0.0268  -0.2652   0.0225   0.1659  -1.7897   0.0175   0.1938  -0.1553  -0.6136  -1.4951  -1.6300   0.1472  -1.3917  -1.6983   6.3487   0.2805  -0.0818  -2.2382  -1.3696  -1.1091 
S   0.3742   0.1952   0.7347   0.7087  -0.1988   0.3659   0.4729   0.5990   0.0066  -1.1947  -1.2643   0.3866  -0.7931  -1.3415   0.2805   1.0644   0.7104  -1.6454  -0.8597  -0.8708 
T   0.1459   0.0499   0.3312   0.2282  -0.3339   0.2155   0.2292  -0.3557  -0.1753  -0.3875  -0.5886   0.2232  -0.3339  -0.8101  -0.0818   0.7104   1.2187  -1.2508  -0.6083  -0.1465 
W  -1.3382  -1.0855  -1.9443  -2.7349  -0.3229  -1.5113  -2.2879  -2.7040   0.1377  -0.1401   0.4273  -1.9451   0.4348   2.8242  -2.2382  -1.6454  -1.2508  11.9598   3.3731  -0.5233 
Y  -0.7638  -0.4939  -0.7189  -1.5585  -0.0582  -0.6300  -1.2174  -1.9372   1.2151   0.0491   0.3859  -0.9619   0.3875   2.8672  -1.3696  -0.8597  -0.6083   3.3731   4.6621  -0.0930 
V   0.0522  -1.2201  -1.6609  -2.3207   0.6015  -1.0915  -1.5263  -2.1728  -1.2200   2.3315   1.7565  -1.3504   1.2144   0.9909  -1.1091  -0.8708  -0.1465  -0.5233  -0.0930   2.2889 
