# MMLSUM Exp_Change = 0.8 log odds matrix (in 1/4-bit units)
# Default Gap-open  = 17.0858
# Default Gap-extn  = 1.4437
# Notes: Matrix derived from MMLSUM (t = 203) Markov Matrix
# File generated on: 2020/10/02 12:50:15
    A        R        N        D        C        Q        E        G        H        I        L        K        M        F        P        S        T        W        Y        V        
A   4.4421  -1.0140  -1.2510  -1.8170   0.1281  -0.3195  -0.4614   0.3774  -1.7220  -1.0390  -1.0792  -0.6800  -0.6583  -2.2047  -0.4928   1.0126  -0.0466  -3.3608  -2.2628   0.0738 
R  -1.0140   7.3096   0.2228  -0.4700  -3.3916   1.8828   1.0178  -2.5441   1.1948  -3.2859  -2.6104   3.7531  -1.6413  -3.5777  -1.6408  -0.3449  -0.6291  -2.4241  -1.3077  -3.2493 
N  -1.2510   0.2228   7.1957   3.1668  -3.3181   0.8202   0.6995   0.4547   1.0409  -4.4844  -4.6209   1.0166  -2.9577  -4.1004  -0.9988   1.3517   0.3319  -4.4169  -1.4503  -4.0178 
D  -1.8170  -0.4700   3.1668   8.1703  -5.4303   0.8615   3.2777  -0.2961  -0.4794  -6.3872  -6.0685   0.7237  -4.4872  -6.0701  -0.8562   0.6960  -0.3244  -5.8244  -3.7954  -5.6126 
C   0.1281  -3.3916  -3.3181  -5.4303  16.6552  -3.8456  -5.1003  -4.0528  -2.6213  -0.6332  -0.3154  -4.5327  -0.4629  -0.3090  -4.5099  -0.4688  -1.2579  -1.8362  -1.0953   0.0833 
Q  -0.3195   1.8828   0.8202   0.8615  -3.8456   5.9062   2.7360  -2.2634   1.4338  -3.3187  -2.6390   2.1625  -0.9645  -3.5466  -0.8354   0.2958   0.0469  -3.5158  -1.5897  -2.7734 
E  -0.4614   1.0178   0.6995   3.2777  -5.1003   2.7360   6.2459  -2.1912  -0.2701  -4.4530  -4.2115   1.9547  -2.7870  -5.0816  -0.6042   0.1988  -0.1662  -5.1805  -3.0836  -3.5406 
G   0.3774  -2.5441   0.4547  -0.2961  -4.0528  -2.2634  -2.1912   9.3096  -2.2348  -5.8921  -5.5233  -2.0651  -4.1693  -4.8375  -1.4452   0.4044  -1.6817  -5.5302  -4.4686  -4.9756 
H  -1.7220   1.1948   1.0409  -0.4794  -2.6213   1.4338  -0.2701  -2.2348  11.3318  -3.6101  -2.7618   0.3183  -2.0611  -1.0485  -2.2206  -0.6463  -1.1349  -0.5828   2.3457  -3.3143 
I  -1.0390  -3.2859  -4.4844  -6.3872  -0.6332  -3.3187  -4.4530  -5.8921  -3.6101   5.9694   3.4436  -3.6259   2.5229   1.4428  -3.5649  -3.1110  -1.2086  -1.8102  -1.3629   4.3142 
L  -1.0792  -2.6104  -4.6209  -6.0685  -0.3154  -2.6390  -4.2115  -5.5233  -2.7618   3.4436   5.7274  -3.4704   3.3962   2.4123  -3.9023  -3.3413  -1.8974  -0.6108  -0.5675   2.3156 
K  -0.6800   3.7531   1.0166   0.7237  -4.5327   2.1625   1.9547  -2.0651   0.3183  -3.6259  -3.4704   5.9232  -2.0235  -4.5659  -0.5653   0.1386  -0.0152  -4.5788  -2.5953  -3.4403 
M  -0.6583  -1.6413  -2.9577  -4.4872  -0.4629  -0.9645  -2.7870  -4.1693  -2.0611   2.5229   3.3962  -2.0235   7.9648   1.5268  -3.6639  -1.8670  -1.0164  -0.2121  -0.0476   1.3271 
F  -2.2047  -3.5777  -4.1004  -6.0701  -0.3090  -3.5466  -5.0816  -4.8375  -1.0485   1.4428   2.4123  -4.5659   1.5268   8.8866  -3.8125  -3.2489  -2.3115   3.4611   4.8558   0.5970 
P  -0.4928  -1.6408  -0.9988  -0.8562  -4.5099  -0.8354  -0.6042  -1.4452  -2.2206  -3.5649  -3.9023  -0.5653  -3.6639  -3.8125  11.3397  -0.0986  -0.9419  -4.9373  -3.3579  -2.6059 
S   1.0126  -0.3449   1.3517   0.6960  -0.4688   0.2958   0.1988   0.4044  -0.6463  -3.1110  -3.3413   0.1386  -1.8670  -3.2489  -0.0986   4.3900   2.1565  -3.7640  -2.2121  -2.2408 
T  -0.0466  -0.6291   0.3319  -0.3244  -1.2579   0.0469  -0.1662  -1.6817  -1.1349  -1.2086  -1.8974  -0.0152  -1.0164  -2.3115  -0.9419   2.1565   5.2302  -3.0713  -1.7647  -0.2786 
W  -3.3608  -2.4241  -4.4169  -5.8244  -1.8362  -3.5158  -5.1805  -5.5302  -0.5828  -1.8102  -0.6108  -4.5788  -0.2121   3.4611  -4.9373  -3.7640  -3.0713  17.1345   4.4030  -2.5976 
Y  -2.2628  -1.3077  -1.4503  -3.7954  -1.0953  -1.5897  -3.0836  -4.4686   2.3457  -1.3629  -0.5675  -2.5953  -0.0476   4.8558  -3.3579  -2.2121  -1.7647   4.4030   9.9157  -1.3575 
V   0.0738  -3.2493  -4.0178  -5.6126   0.0833  -2.7734  -3.5406  -4.9756  -3.3143   4.3142   2.3156  -3.4403   1.3271   0.5970  -2.6059  -2.2408  -0.2786  -2.5976  -1.3575   5.4257 
