# MMLSUM Exp_Change = 0.7 log odds matrix (in 1/4-bit units)
# Default Gap-open  = 19.3514
# Default Gap-extn  = 2.1146
# Notes: Matrix derived from MMLSUM (t = 140) Markov Matrix
# File generated on: 2020/10/02 12:50:15
    A        R        N        D        C        Q        E        G        H        I        L        K        M        F        P        S        T        W        Y        V        
A   6.9070  -1.9699  -2.4584  -3.3241  -0.3981  -0.8509  -1.0771  -0.1276  -2.9589  -2.1154  -1.9544  -1.4559  -1.2840  -3.5745  -1.2401   1.1324  -0.6395  -4.9474  -3.5743  -0.2001 
R  -1.9699  10.0646  -0.5002  -1.7270  -4.9431   1.9001   0.4786  -4.1220   0.9096  -4.8524  -3.7603   4.3833  -2.5296  -5.4198  -3.0067  -1.1560  -1.5493  -3.5270  -2.1420  -4.9691 
N  -2.4584  -0.5002  10.1634   3.3551  -4.8360   0.4730  -0.1044  -0.2029   0.8034  -6.3330  -6.7317   0.6901  -4.2690  -5.8976  -2.1152   1.3691  -0.1071  -6.3381  -2.1627  -5.8997 
D  -3.3241  -1.7270   3.3551  10.5031  -7.8364   0.1730   3.4459  -1.2920  -1.5010  -9.1856  -8.6007  -0.0295  -6.6186  -8.5259  -1.9865   0.2062  -1.1846  -8.0044  -5.6201  -8.2716 
C  -0.3981  -4.9431  -4.8360  -7.8364  18.9060  -5.8592  -7.7172  -5.9295  -3.9553  -1.8867  -1.3196  -6.8721  -1.3914  -1.2710  -6.6799  -0.9838  -2.2768  -3.2078  -2.1877  -0.7343 
Q  -0.8509   1.9001   0.4730   0.1730  -5.8592   9.2041   3.1899  -3.8587   1.4504  -5.0804  -3.7992   2.3420  -1.1764  -5.3409  -1.8163  -0.1510  -0.4549  -5.0793  -2.4979  -4.1931 
E  -1.0771   0.4786  -0.1044   3.4459  -7.7172   3.1899   8.7512  -3.8725  -1.1877  -6.5088  -6.0708   1.8775  -4.1276  -7.4179  -1.5816  -0.4839  -0.8811  -7.3512  -4.6288  -5.0882 
G  -0.1276  -4.1220  -0.2029  -1.2920  -5.9295  -3.8587  -3.8725  10.9591  -3.6157  -8.3501  -7.7228  -3.5535  -5.8863  -6.5637  -2.7065  -0.1900  -3.0117  -7.5095  -6.4131  -7.1569 
H  -2.9589   0.9096   0.8034  -1.5010  -3.9553   1.4504  -1.1877  -3.6157  14.2999  -5.4829  -4.1418  -0.3630  -3.2978  -2.0165  -3.6615  -1.4867  -2.2116  -1.5507   2.4070  -5.0269 
I  -2.1154  -4.8524  -6.3330  -9.1856  -1.8867  -5.0804  -6.5088  -8.3501  -5.4829   8.1940   3.5528  -5.1740   2.5499   0.8680  -5.2133  -4.7657  -2.1382  -3.3311  -2.8580   4.9654 
L  -1.9544  -3.7603  -6.7317  -8.6007  -1.3196  -3.7992  -6.0708  -7.7228  -4.1418   3.5528   7.6418  -5.0677   3.8185   2.2187  -5.6744  -5.1500  -3.1637  -1.7593  -1.7609   1.9661 
K  -1.4559   4.3833   0.6901  -0.0295  -6.8721   2.3420   1.8775  -3.5535  -0.3630  -5.1740  -5.0677   8.5728  -2.9720  -6.8199  -1.4469  -0.4874  -0.5721  -6.6542  -4.0566  -5.2181 
M  -1.2840  -2.5296  -4.2690  -6.6186  -1.3914  -1.1764  -4.1276  -5.8863  -3.2978   2.5499   3.8185  -2.9720  11.7466   1.1284  -5.5884  -2.7772  -1.7483  -1.0478  -0.7370   0.7020 
F  -3.5745  -5.4198  -5.8976  -8.5259  -1.2710  -5.3409  -7.4179  -6.5637  -2.0165   0.8680   2.2187  -6.8199   1.1284  11.4137  -5.3887  -4.7500  -3.6332   3.0708   5.2187  -0.2568 
P  -1.2401  -3.0067  -2.1152  -1.9865  -6.6799  -1.8163  -1.5816  -2.7065  -3.6615  -5.2133  -5.6744  -1.4469  -5.5884  -5.3887  13.4656  -0.7676  -1.9468  -6.9009  -4.9359  -3.8408 
S   1.1324  -1.1560   1.3691   0.2062  -0.9838  -0.1510  -0.4839  -0.1900  -1.4867  -4.7657  -5.1500  -0.4874  -2.7772  -4.7500  -0.7676   7.0899   2.7565  -5.3867  -3.4072  -3.5588 
T  -0.6395  -1.5493  -0.1071  -1.1846  -2.2768  -0.4549  -0.8811  -3.0117  -2.2116  -2.1382  -3.1637  -0.5721  -1.7483  -3.6332  -1.9468   2.7565   8.0365  -4.5065  -2.8314  -0.6030 
W  -4.9474  -3.5270  -6.3381  -8.0044  -3.2078  -5.0793  -7.3512  -7.5095  -1.5507  -3.3311  -1.7593  -6.6542  -1.0478   3.0708  -6.9009  -5.3867  -4.5065  19.1650   4.1671  -4.4264 
Y  -3.5743  -2.1420  -2.1627  -5.6201  -2.1877  -2.4979  -4.6288  -6.4131   2.4070  -2.8580  -1.7609  -4.0566  -0.7370   5.2187  -4.9359  -3.4072  -2.8314   4.1671  12.4542  -2.5890 
V  -0.2001  -4.9691  -5.8997  -8.2716  -0.7343  -4.1931  -5.0882  -7.1569  -5.0269   4.9654   1.9661  -5.2181   0.7020  -0.2568  -3.8408  -3.5588  -0.6030  -4.4264  -2.5890   7.5209 
