# MMLSUM Exp_Change = 0.6 log odds matrix (in 1/4-bit units)
# Default Gap-open  = 21.6892
# Default Gap-extn  = 2.9142
# Notes: Matrix derived from MMLSUM (t = 101) Markov Matrix
# File generated on: 2020/10/02 12:50:15
    A        R        N        D        C        Q        E        G        H        I        L        K        M        F        P        S        T        W        Y        V        
A   8.7567  -3.0689  -3.8153  -4.9403  -1.1744  -1.5887  -1.8806  -0.8872  -4.2793  -3.3942  -2.9638  -2.3991  -2.0799  -4.9949  -2.1711   0.8880  -1.4948  -6.4876  -4.9189  -0.7236 
R  -3.0689  12.0096  -1.4512  -3.1475  -6.4366   1.5123  -0.3628  -5.6939   0.2920  -6.3918  -4.9256   4.4014  -3.5337  -7.2548  -4.4509  -2.1504  -2.6461  -4.6735  -3.1033  -6.6881 
N  -3.8153  -1.4512  12.2669   3.0634  -6.3350  -0.1456  -1.1800  -1.0789   0.2412  -8.0352  -8.7706   0.0766  -5.5753  -7.6444  -3.3449   1.0319  -0.8212  -8.1922  -3.0152  -7.7342 
D  -4.9403  -3.1475   3.0634  12.1206 -10.1176  -0.7981   3.1370  -2.4258  -2.6824 -11.8413 -10.9433  -1.0238  -8.7299 -10.7822  -3.2268  -0.5389  -2.2396  -9.9888  -7.4194 -10.9057 
C  -1.1744  -6.4366  -6.3350 -10.1176  20.3208  -7.8679 -10.3544  -7.7598  -5.3036  -3.2753  -2.4621  -9.2082  -2.4592  -2.3775  -8.7818  -1.7170  -3.4326  -4.6139  -3.3852  -1.7263 
Q  -1.5887   1.5123  -0.1456  -0.7981  -7.8679  11.6732   3.1413  -5.4914   1.0942  -6.8966  -4.9738   2.0884  -1.5535  -7.1333  -2.9286  -0.8414  -1.1886  -6.6026  -3.5091  -5.6269 
E  -1.8806  -0.3628  -1.1800   3.1370 -10.3544   3.1413  10.5935  -5.5895  -2.2996  -8.5115  -7.8613   1.4193  -5.5138  -9.6633  -2.7017  -1.3974  -1.8024  -9.3972  -6.1676  -6.5838 
G  -0.8872  -5.6939  -1.0789  -2.4258  -7.7598  -5.4914  -5.5895  12.0369  -5.0219 -10.6552  -9.7690  -5.0725  -7.5243  -8.1578  -4.0383  -1.0119  -4.4349  -9.3280  -8.2736  -9.2647 
H  -4.2793   0.2920   0.2412  -2.6824  -5.3036   1.0942  -2.2996  -5.0219  16.2315  -7.3215  -5.5173  -1.2964  -4.6122  -3.1474  -5.1318  -2.4889  -3.4211  -2.6795   2.0091  -6.7020 
I  -3.3942  -6.3918  -8.0352 -11.8413  -3.2753  -6.8966  -8.5115 -10.6552  -7.3215   9.9907   3.2151  -6.6280   2.1863   0.0261  -6.8290  -6.4324  -3.2303  -4.8693  -4.4619   5.0376 
L  -2.9638  -4.9256  -8.7706 -10.9433  -2.4621  -4.9738  -7.8613  -9.7690  -5.5173   3.2151   9.0888  -6.6491   3.7242   1.6618  -7.3805  -6.9938  -4.5120  -3.0135  -3.1054   1.2507 
K  -2.3991   4.4014   0.0766  -1.0238  -9.2082   2.0884   1.4193  -5.0725  -1.2964  -6.6280  -6.6491  10.5582  -3.9988  -9.0320  -2.4740  -1.3426  -1.3478  -8.6702  -5.5690  -7.0192 
M  -2.0799  -3.5337  -5.5753  -8.7299  -2.4592  -1.5535  -5.5138  -7.5243  -4.6122   2.1863   3.7242  -3.9988  14.4268   0.4192  -7.5183  -3.7561  -2.6162  -2.0326  -1.6032  -0.2472 
F  -4.9949  -7.2548  -7.6444 -10.7822  -2.3775  -7.1333  -9.6633  -8.1578  -3.1474   0.0261   1.6618  -9.0320   0.4192  13.1602  -6.8950  -6.2128  -4.9927   2.3238   4.9970  -1.3257 
P  -2.1711  -4.4509  -3.3449  -3.2268  -8.7818  -2.9286  -2.7017  -4.0383  -5.1318  -6.8290  -7.3805  -2.4740  -7.5183  -6.8950  14.8315  -1.6341  -3.0945  -8.7291  -6.4796  -5.1008 
S   0.8880  -2.1504   1.0319  -0.5389  -1.7170  -0.8414  -1.3974  -1.0119  -2.4889  -6.4324  -6.9938  -1.3426  -3.7561  -6.2128  -1.6341   9.2247   2.8345  -6.9546  -4.6627  -5.0019 
T  -1.4948  -2.6461  -0.8212  -2.2396  -3.4326  -1.1886  -1.8024  -4.4349  -3.4211  -3.2303  -4.5120  -1.3478  -2.6162  -4.9927  -3.0945   2.8345  10.1111  -5.9169  -3.9759  -1.1481 
W  -6.4876  -4.6735  -8.1922  -9.9888  -4.6139  -6.6026  -9.3972  -9.3280  -2.6795  -4.8693  -3.0135  -8.6702  -2.0326   2.3238  -8.7291  -6.9546  -5.9169  20.4446   3.5157  -6.2551 
Y  -4.9189  -3.1033  -3.0152  -7.4194  -3.3852  -3.5091  -6.1676  -8.2736   2.0091  -4.4619  -3.1054  -5.5690  -1.6032   4.9970  -6.4796  -4.6627  -3.9759   3.5157  14.1552  -3.8786 
V  -0.7236  -6.6881  -7.7342 -10.9057  -1.7263  -5.6269  -6.5838  -9.2647  -6.7020   5.0376   1.2507  -7.0192  -0.2472  -1.3257  -5.1008  -5.0019  -1.1481  -6.2551  -3.8786   9.1639 
