# MMLSUM Exp_Change = 0.5 log odds matrix (in 1/4-bit units)
# Default Gap-open  = 24.3357
# Default Gap-extn  = 3.6375
# Notes: Matrix derived from MMLSUM (t = 74) Markov Matrix
# File generated on: 2020/10/02 12:50:15
    A        R        N        D        C        Q        E        G        H        I        L        K        M        F        P        S        T        W        Y        V        
A  10.1607  -4.3013  -5.2986  -6.6526  -2.1549  -2.5179  -2.8613  -1.8535  -5.6908  -4.8372  -4.1078  -3.4976  -3.0451  -6.4856  -3.2652   0.3367  -2.5593  -8.0449  -6.3292  -1.4764 
R  -4.3013  13.4493  -2.5816  -4.6887  -7.9424   0.8231  -1.4236  -7.2973  -0.5754  -7.9586  -6.1643   3.9988  -4.6709  -9.1212  -5.9760  -3.3010  -3.8912  -5.9079  -4.2025  -8.4411 
N  -5.2986  -2.5816  13.8186   2.4348  -7.8696  -0.9883  -2.4474  -2.1344  -0.5750  -9.6877 -10.8022  -0.7684  -6.9359  -9.4036  -4.6829   0.4050  -1.7582 -10.0444  -4.0240  -9.5769 
D  -6.6526  -4.6887   2.4348  13.3113 -12.3564  -1.9722   2.4952  -3.6837  -3.9948 -14.4491 -13.1956  -2.1966 -10.8741 -12.9463  -4.5714  -1.4898  -3.4529 -11.8935  -9.2401 -13.5974 
C  -2.1549  -7.9424  -7.8696 -12.3564  21.3081  -9.9120 -13.0844  -9.5985  -6.7102  -4.7748  -3.7273 -11.5933  -3.6565  -3.6129 -10.8769  -2.6468  -4.7167  -6.0807  -4.6895  -2.8675 
Q  -2.5179   0.8231  -0.9883  -1.9722  -9.9120  13.5328   2.7160  -7.1783   0.4441  -8.7944  -6.2209   1.5084  -2.1503  -8.9631  -4.1655  -1.7401  -2.1230  -8.1485  -4.6441  -7.1125 
E  -2.8613  -1.4236  -2.4474   2.4952 -13.0844   2.7160  11.9867  -7.3556  -3.5654 -10.5203  -9.6499   0.6774  -6.9806 -11.8881  -3.9502  -2.4945  -2.8964 -11.4042  -7.7434  -8.0964 
G  -1.8535  -7.2973  -2.1344  -3.6837  -9.5985  -7.1783  -7.3556  12.8062  -6.4858 -12.8979 -11.7600  -6.6444  -9.1613  -9.7285  -5.4519  -2.0218  -5.9500 -11.0975 -10.1216 -11.3693 
H  -5.6908  -0.5754  -0.5750  -3.9948  -6.7102   0.4441  -3.5654  -6.4858  17.6008  -9.1723  -6.9391  -2.4213  -6.0203  -4.4185  -6.6574  -3.6381  -4.7513  -3.9434   1.2926  -8.3895 
I  -4.8372  -7.9586  -9.6877 -14.4491  -4.7748  -8.7944 -10.5203 -12.8979  -9.1723  11.4387   2.5609  -8.0715   1.5295  -1.0152  -8.4676  -8.1367  -4.4731  -6.4496  -6.1598   4.6968 
L  -4.1078  -6.1643 -10.8022 -13.1956  -3.7273  -6.2209  -9.6499 -11.7600  -6.9391   2.5609  10.2115  -8.2669   3.2558   0.8401  -9.0858  -8.8986  -5.9492  -4.3692  -4.5699   0.2821 
K  -3.4976   3.9988  -0.7684  -2.1966 -11.5933   1.5084   0.6774  -6.6444  -2.4213  -8.0715  -8.2669  12.0720  -5.1403 -11.2553  -3.6376  -2.3862  -2.3138 -10.6901  -7.1525  -8.8771 
M  -3.0451  -4.6709  -6.9359 -10.8741  -3.6565  -2.1503  -6.9806  -9.1613  -6.0203   1.5295   3.2558  -5.1403  16.3914  -0.5215  -9.4898  -4.8464  -3.6320  -3.1579  -2.6310  -1.4221 
F  -6.4856  -9.1212  -9.4036 -12.9463  -3.6129  -8.9631 -11.8881  -9.7285  -4.4185  -1.0152   0.8401 -11.2553  -0.5215  14.4414  -8.4110  -7.6990  -6.4195   1.3372   4.3977  -2.5567 
P  -3.2652  -5.9760  -4.6829  -4.5714 -10.8769  -4.1655  -3.9502  -5.4519  -6.6574  -8.4676  -9.0858  -3.6376  -9.4898  -8.4110  15.7953  -2.6730  -4.3715 -10.5179  -8.0469  -6.4306 
S   0.3367  -3.3010   0.4050  -1.4898  -2.6468  -1.7401  -2.4945  -2.0218  -3.6381  -8.1367  -8.8986  -2.3862  -4.8464  -7.6990  -2.6730  10.8865   2.5082  -8.5369  -6.0060  -6.5709 
T  -2.5593  -3.8912  -1.7582  -3.4529  -4.7167  -2.1230  -2.8964  -5.9500  -4.7513  -4.4731  -5.9492  -2.3138  -3.6320  -6.4195  -4.3715   2.5082  11.6734  -7.3629  -5.2215  -1.9097 
W  -8.0449  -5.9079 -10.0444 -11.8935  -6.0807  -8.1485 -11.4042 -11.0975  -3.9434  -6.4496  -4.3692 -10.6901  -3.1579   1.3372 -10.5179  -8.5369  -7.3629  21.3393   2.5952  -8.1117 
Y  -6.3292  -4.2025  -4.0240  -9.2401  -4.6895  -4.6441  -7.7434 -10.1216   1.2926  -6.1598  -4.5699  -7.1525  -2.6310   4.3977  -8.0469  -6.0060  -5.2215   2.5952  15.3838  -5.2423 
V  -1.4764  -8.4411  -9.5769 -13.5974  -2.8675  -7.1125  -8.0964 -11.3693  -8.3895   4.6968   0.2821  -8.8771  -1.4221  -2.5567  -6.4306  -6.5709  -1.9097  -8.1117  -5.2423  10.4666 
