# MMLSUM Exp_Change = 0.4 log odds matrix (in 1/4-bit units)
# Default Gap-open  = 27.5747
# Default Gap-extn  = 4.1235
# Notes: Matrix derived from MMLSUM (t = 54) Markov Matrix
# File generated on: 2020/10/02 12:50:15
    A        R        N        D        C        Q        E        G        H        I        L        K        M        F        P        S        T        W        Y        V        
A  11.2566  -5.6945  -6.9315  -8.4923  -3.3453  -3.6555  -4.0398  -3.0313  -7.2327  -6.4565  -5.4177  -4.7751  -4.2048  -8.0922  -4.5426  -0.5042  -3.8338  -9.6868  -7.8564  -2.4674 
R  -5.6945  14.5598  -3.9006  -6.3701  -9.5319  -0.1401  -2.6963  -8.9900  -1.6804  -9.6159  -7.5347   3.2485  -5.9762 -11.0748  -7.6211  -4.6272  -5.3041  -7.2813  -5.4728 -10.2826 
N  -6.9315  -3.9006  15.0100   1.5128  -9.5012  -2.0584  -3.9040  -3.3825  -1.6351 -11.3801 -12.8961  -1.8443  -8.4116 -11.2411  -6.1626  -0.4968  -2.9180 -11.9635  -5.2201 -11.4919 
D  -8.4923  -6.3701   1.5128  14.2282 -14.6333  -3.3451   1.5631  -5.0946  -5.4612 -17.0988 -15.4486  -3.5540 -13.1144 -15.1127  -6.0547  -2.6522  -4.8404 -13.8157 -11.1420 -16.4392 
C  -3.3453  -9.5319  -9.5012 -14.6333  22.0430 -12.0486 -16.0012 -11.5099  -8.2306  -6.4121  -5.1444 -14.0955  -5.0129  -5.0053 -13.0340  -3.7870  -6.1570  -7.6586  -6.1368  -4.1804 
Q  -3.6555  -0.1401  -2.0584  -3.3451 -12.0486  14.9740   1.9621  -8.9664  -0.4804 -10.8203  -7.5987   0.6346  -2.9976 -10.8852  -5.5577  -2.8560  -3.2689  -9.7830  -5.9414  -8.7038 
E  -4.0398  -2.6963  -3.9040   1.5631 -16.0012   1.9621  13.0748  -9.2172  -5.0001 -12.6012 -11.5065  -0.3263  -8.5752 -14.1664  -5.3551  -3.7843  -4.1778 -13.4526  -9.4143  -9.6957 
G  -3.0313  -8.9900  -3.3825  -5.0946 -11.5099  -8.9664  -9.2172  13.3876  -8.0595 -15.1626 -13.7822  -8.3186 -10.8713 -11.3639  -6.9897  -3.2310  -7.5928 -12.9089 -12.0294 -13.5420 
H  -7.2327  -1.6804  -1.6351  -5.4612  -8.2306  -0.4804  -5.0001  -8.0595  18.6291 -11.0970  -8.4672  -3.7411  -7.5625  -5.8517  -8.2887  -4.9590  -6.2310  -5.3657   0.2976 -10.1529 
I  -6.4565  -9.6159 -11.3801 -17.0988  -6.4121 -10.8203 -12.6012 -15.1626 -11.0970  12.6184   1.6252  -9.5862   0.6013  -2.2581 -10.1923  -9.9292  -5.8890  -8.1250  -7.9836   4.0068 
L  -5.4177  -7.5347 -12.8961 -15.4486  -5.1444  -7.5987 -11.5065 -13.7822  -8.4672   1.6252  11.1061  -9.9810   2.4645  -0.2285 -10.8601 -10.9129  -7.5141  -5.8616  -6.1775  -0.9191 
K  -4.7751   3.2485  -1.8443  -3.5540 -14.0955   0.6346  -0.3263  -8.3186  -3.7411  -9.5862  -9.9810  13.2591  -6.4407 -13.5558  -4.9663  -3.6282  -3.4837 -12.7817  -8.8515 -10.8431 
M  -4.2048  -5.9762  -8.4116 -13.1144  -5.0129  -2.9976  -8.5752 -10.8713  -7.5625   0.6013   2.4645  -6.4407  17.8911  -1.6864 -11.5573  -6.0963  -4.8287  -4.4527  -3.8441  -2.8090 
F  -8.0922 -11.0748 -11.2411 -15.1127  -5.0053 -10.8852 -14.1664 -11.3639  -5.8517  -2.2581  -0.2285 -13.5558  -1.6864  15.4249 -10.0107  -9.2757  -7.9636   0.1284   3.4869  -3.9612 
P  -4.5426  -7.6211  -6.1626  -6.0547 -13.0340  -5.5577  -5.3551  -6.9897  -8.2887 -10.1923 -10.8601  -4.9663 -11.5573 -10.0107  16.5173  -3.9024  -5.8048 -12.3522  -9.7024  -7.8843 
S  -0.5042  -4.6272  -0.4968  -2.6522  -3.7870  -2.8560  -3.7843  -3.2310  -4.9590  -9.9292 -10.9129  -3.6282  -6.0963  -9.2757  -3.9024  12.2014   1.8318 -10.2027  -7.4826  -8.2950 
T  -3.8338  -5.3041  -2.9180  -4.8404  -6.1570  -3.2689  -4.1778  -7.5928  -6.2310  -5.8890  -7.5141  -3.4837  -4.8287  -7.9636  -5.8048   1.8318  12.8875  -8.9090  -6.6114  -2.9034 
W  -9.6868  -7.2813 -11.9635 -13.8157  -7.6586  -9.7830 -13.4526 -12.9089  -5.3657  -8.1250  -5.8616 -12.7817  -4.4527   0.1284 -12.3522 -10.2027  -8.9090  22.0065   1.4351 -10.0506 
Y  -7.8564  -5.4728  -5.2201 -11.1420  -6.1368  -5.9414  -9.4143 -12.0294   0.2976  -7.9836  -6.1775  -8.8515  -3.8441   3.4869  -9.7024  -7.4826  -6.6114   1.4351  16.3183  -6.7269 
V  -2.4674 -10.2826 -11.4919 -16.4392  -4.1804  -8.7038  -9.6957 -13.5420 -10.1529   4.0068  -0.9191 -10.8431  -2.8090  -3.9612  -7.8843  -8.2950  -2.9034 -10.0506  -6.7269  11.5191 
