# MMLSUM Exp_Change = 0.3 log odds matrix (in 1/4-bit units)
# Default Gap-open  = 31.8617
# Default Gap-extn  = 4.4351
# Notes: Matrix derived from MMLSUM (t = 37) Markov Matrix
# File generated on: 2020/10/02 12:50:15
    A        R        N        D        C        Q        E        G        H        I        L        K        M        F        P        S        T        W        Y        V        
A  12.2210  -7.5106  -8.9989 -10.7697  -4.9774  -5.2319  -5.6528  -4.6510  -9.1874  -8.5310  -7.1486  -6.4801  -5.7959 -10.1064  -6.2501  -1.8188  -5.5561 -11.7183  -9.7866  -3.9081 
R  -7.5106  15.5306  -5.6552  -8.4809 -11.5065  -1.5716  -4.4162 -11.0780  -3.2388 -11.6677  -9.3091   1.9976  -7.7051 -13.4480  -9.6792  -6.3810  -7.1456  -9.0636  -7.1660 -12.5321 
N  -8.9989  -5.6552  16.0470   0.1137 -11.5303  -3.5746  -5.8062  -5.0643  -3.1507 -13.4328 -15.4053  -3.3686 -10.2871 -13.4804  -8.0580  -1.8656  -4.5264 -14.2828  -6.8458 -13.8106 
D -10.7697  -8.4809   0.1137  15.0295 -17.3258  -5.1639   0.1554  -6.9240  -7.3498 -20.2190 -18.0792  -5.3460 -15.8209 -17.6511  -7.9517  -4.2553  -6.6587 -16.1009 -13.4532 -19.9204 
C  -4.9774 -11.5065 -11.5303 -17.3258  22.6698 -14.6324 -19.6221 -13.8248 -10.1521  -8.4745  -6.9790 -17.1272  -6.7882  -6.8173 -15.6132  -5.3670  -8.0206  -9.6387  -7.9985  -5.9172 
Q  -5.2319  -1.5716  -3.5746  -5.1639 -14.6324  16.2345   0.7168 -11.1669  -1.8724 -13.3137  -9.3807  -0.7154  -4.2989 -13.2283  -7.3687  -4.4142  -4.8554 -11.8095  -7.6575 -10.6944 
E  -5.6528  -4.4162  -5.8062   0.1554 -19.6221   0.7168  14.0340 -11.4934  -6.8655 -15.1047 -13.7583  -1.7930 -10.5879 -16.8741  -7.1801  -5.5104  -5.8917 -15.8941 -11.4834 -11.6829 
G  -4.6510 -11.0780  -5.0643  -6.9240 -13.8248 -11.1669 -11.4934  13.8892 -10.0345 -17.8254 -16.1871 -10.3960 -12.9684 -13.3762  -8.9356  -4.8760  -9.6545 -15.0936 -14.3309 -16.1461 
H  -9.1874  -3.2388  -3.1507  -7.3498 -10.1521  -1.8724  -6.8655 -10.0345  19.5113 -13.4269 -10.3914  -5.5004  -9.5214  -7.7111 -10.3221  -6.7050  -8.1317  -7.2103  -1.1692 -12.3078 
I  -8.5310 -11.6677 -13.4328 -20.2190  -8.4745 -13.3137 -15.1047 -17.8254 -13.4269  13.6902   0.2190 -11.4712  -0.7917  -3.9393 -12.3141 -12.1220  -7.7396 -10.1978 -10.2423   2.8172 
L  -7.1486  -9.3091 -15.4053 -18.0792  -6.9790  -9.3807 -13.7583 -16.1871 -10.3914   0.2190  11.9074 -12.0997   1.1841  -1.7539 -13.0225 -13.3741  -9.4913  -7.7670  -8.2110  -2.5756 
K  -6.4801   1.9976  -3.3686  -5.3460 -17.1272  -0.7154  -1.7930 -10.3960  -5.5004 -11.4712 -12.0997  14.3079  -8.1589 -16.3102  -6.7162  -5.3076  -5.0905 -15.2976 -10.9663 -13.2497 
M  -5.7959  -7.7051 -10.2871 -15.8209  -6.7882  -4.2989 -10.5879 -12.9684  -9.5214  -0.7917   1.1841  -8.1589  19.1901  -3.2998 -14.0661  -7.7613  -6.4502  -6.1695  -5.4846  -4.6524 
F -10.1064 -13.4480 -13.4804 -17.6511  -6.8173 -13.2283 -16.8741 -13.3762  -7.7111  -3.9393  -1.7539 -16.3102  -3.2998  16.2822 -11.9969 -11.2408  -9.9118  -1.5287   2.0903  -5.7963 
P  -6.2501  -9.6792  -8.0580  -7.9517 -15.6132  -7.3687  -7.1801  -8.9356 -10.3221 -12.3141 -13.0225  -6.7162 -14.0661 -11.9969  17.1360  -5.5634  -7.6606 -14.5634 -11.7507  -9.7414 
S  -1.8188  -6.3810  -1.8656  -4.2553  -5.3670  -4.4142  -5.5104  -4.8760  -6.7050 -12.1220 -13.3741  -5.3076  -7.7613 -11.2408  -5.5634  13.3684   0.6542 -12.2596  -9.3702 -10.4717 
T  -5.5561  -7.1456  -4.5264  -6.6587  -8.0206  -4.8554  -5.8917  -9.6545  -8.1317  -7.7396  -9.4913  -5.0905  -6.4502  -9.9118  -7.6606   0.6542  13.9530 -10.8487  -8.4137  -4.3437 
W -11.7183  -9.0636 -14.2828 -16.1009  -9.6387 -11.8095 -15.8941 -15.0936  -7.2103 -10.1978  -7.7670 -15.2976  -6.1695  -1.5287 -14.5634 -12.2596 -10.8487  22.5764  -0.1807 -12.4020 
Y  -9.7866  -7.1660  -6.8458 -13.4532  -7.9985  -7.6575 -11.4834 -14.3309  -1.1692 -10.2423  -8.2110 -10.9663  -5.4846   2.0903 -11.7507  -9.3702  -8.4137  -0.1807  17.1280  -8.6128 
V  -3.9081 -12.5321 -13.8106 -19.9204  -5.9172 -10.6944 -11.6829 -16.1461 -12.3078   2.8172  -2.5756 -13.2497  -4.6524  -5.7963  -9.7414 -10.4717  -4.3437 -12.4020  -8.6128  12.4712 
