# MMLSUM Exp_Change = 0.9 log odds matrix (in 1/4-bit units)
# Default Gap-open  = 15
# Default Gap-extn  = 1
# Notes: Matrix derived from MMLSUM (t = 373) Markov Matrix
# File generated on: 2020/10/02 12:50:15
     A   R   N   D   C   Q   E   G   H   I   L   K   M   F   P   S   T   W   Y   V   
A    1   0   0   0   0   0   0   0   0   0   0   0   0  -1   0   0   0  -1  -1   0
R    0   3   1   0  -1   1   1  -1   1  -1  -1   2  -1  -1   0   0   0  -1   0  -1
N    0   1   2   2  -1   1   1   1   1  -2  -2   1  -1  -2   0   1   0  -2  -1  -2
D    0   0   2   4  -2   1   2   1   0  -3  -3   1  -2  -3   0   1   0  -3  -2  -2
C    0  -1  -1  -2  11  -1  -2  -2  -1   0   0  -2   0   0  -2   0   0   0   0   1
Q    0   1   1   1  -1   1   1  -1   1  -1  -1   1  -1  -1   0   0   0  -2  -1  -1
E    0   1   1   2  -2   1   2   0   0  -2  -2   1  -1  -2   0   0   0  -2  -1  -2
G    0  -1   1   1  -2  -1   0   6  -1  -3  -3   0  -2  -2   0   1   0  -3  -2  -2
H    0   1   1   0  -1   1   0  -1   5  -1  -1   1  -1   0  -1   0   0   0   1  -1
I    0  -1  -2  -3   0  -1  -2  -3  -1   3   2  -2   2   1  -1  -1   0   0   0   2
L    0  -1  -2  -3   0  -1  -2  -3  -1   2   3  -1   2   2  -2  -1  -1   0   0   2
K    0   2   1   1  -2   1   1   0   1  -2  -1   2  -1  -2   0   0   0  -2  -1  -1
M    0  -1  -1  -2   0  -1  -1  -2  -1   2   2  -1   2   1  -1  -1   0   0   0   1
F   -1  -1  -2  -3   0  -1  -2  -2   0   1   2  -2   1   4  -2  -1  -1   3   3   1
P    0   0   0   0  -2   0   0   0  -1  -1  -2   0  -1  -2   6   0   0  -2  -1  -1
S    0   0   1   1   0   0   0   1   0  -1  -1   0  -1  -1   0   1   1  -2  -1  -1
T    0   0   0   0   0   0   0   0   0   0  -1   0   0  -1   0   1   1  -1  -1   0
W   -1  -1  -2  -3   0  -2  -2  -3   0   0   0  -2   0   3  -2  -2  -1  12   3  -1
Y   -1   0  -1  -2   0  -1  -1  -2   1   0   0  -1   0   3  -1  -1  -1   3   5   0
V    0  -1  -2  -2   1  -1  -2  -2  -1   2   2  -1   1   1  -1  -1   0  -1   0   2
